Evidence map›Paper›PMID 24943244›Full record

ArticleBMC microbiology2014

OmpU as a biomarker for rapid discrimination between toxigenic and epidemic Vibrio cholerae O1/O139 and non-epidemic Vibrio cholerae in a modified MALDI-TOF MS assay.

Armand Paauw, Hein Trip, Marcin Niemcewicz, Ricela Sellek, Jonathan Me Heng, Roos H Mars-Groenendijk, Ad L de Jong, Joanna A Majchrzykiewicz-Koehorst, Jaran S Olsen, Evgeni Tsivtsivadze

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in BMC microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Differential Recognition ofInfection and immunity · 2019
    Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Armand PaauwDepartment of CBRN Protection, TNO, P,O, Box 45, Rijswijk 2280 AA, The Netherlands. armand.paauw@TNO.nl.
Hein Trip
Marcin Niemcewicz
Ricela Sellek
Jonathan Me Heng
Roos H Mars-Groenendijk
Ad L de Jong
Joanna A Majchrzykiewicz-Koehorst
Jaran S Olsen
Evgeni Tsivtsivadze
Centro de Investigaciones Energéticas, Medioambientales y Tecnológicas · ESNorwegian Defence Research Establishment · NOWojskowy Instytut Higieny i Epidemiologii · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCholera is an acute diarrheal disease caused by Vibrio cholerae. Outbreaks are caused by a genetically homogenous group of strains from serogroup O1 or O139 that are able to produce the cholera toxin. Rapid detection and identification of these epidemic strains is essential for an effective response to cholera outbreaks.

resultsThe use of ferulic acid as a matrix in a new MALDI-TOF MS assay increased the measurable mass range of existing MALDI-TOF MS protocols for bacterial identification. The assay enabled rapid discrimination between epidemic V. cholerae O1/O139 strains and other less pathogenic V. cholerae strains. OmpU, an outer membrane protein whose amino acid sequence is highly conserved among epidemic strains of V. cholerae, appeared as a discriminatory marker in the novel MALDI-TOF MS assay.

conclusionsThe extended mass range of MALDI-TOF MS measurements obtained by using ferulic acid improved the screening for biomarkers in complex protein mixtures. Differences in the mass of abundant homologous proteins due to variation in amino acid sequences can rapidly be examined in multiple samples. Here, a rapid MALDI-TOF MS assay was developed that could discriminate between epidemic O1/O139 strains and other less pathogenic V. cholerae strains based on differences in mass of the OmpU protein. It appeared that the amino acid sequence of OmpU from epidemic V. cholerae O1/O139 strains is unique and highly conserved.

Indexed as

Adhesins, BacterialBacteriological TechniquesCholeraDNA, BacterialHumansMolecular Sequence DataSequence Analysis, DNASpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationVibrio choleraeAdhesins, BacterialDNA, BacterialOmpU protein, Vibrio cholerae

Identifiers

PMID24943244
PMCPMC4078931
OpenAlexW2172130169

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.