Evidence map›Paper›PMID 24942742›Full record

ArticleThe Journal of biological chemistry2014

Maturation of Rhizobium leguminosarum hydrogenase in the presence of oxygen requires the interaction of the chaperone HypC and the scaffolding protein HupK.

Marta Albareda, Luis F Pacios, Hamid Manyani, Luis Rey, Belén Brito, Juan Imperial, Tomás Ruiz-Argüeso, Jose M Palacios

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Proteomic and Mutant Analysis of Hydrogenase Maturation Protein GeneInternational journal of molecular sciences · 2023
    Article
  3. Biosynthesis of Salmonella enterica [NiFe]-hydrogenase-5: probing the roles of system-specific accessory proteins.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Marta AlbaredaFrom the Centro de Biotecnología y Genómica de Plantas and Departamento de Biotecnología, Escuela Técnica Superior de Ingenieros Agrónomos, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid, Spain.
Luis F PaciosDepartamento de Biotecnología, Escuela Técnica Superior de Ingenieros de Montes, Universidad Politécnica de Madrid, 28040 Madrid, Spain, and.
Hamid ManyaniFrom the Centro de Biotecnología y Genómica de Plantas and Departamento de Biotecnología, Escuela Técnica Superior de Ingenieros Agrónomos, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid, Spain.
Luis ReyFrom the Centro de Biotecnología y Genómica de Plantas and Departamento de Biotecnología, Escuela Técnica Superior de Ingenieros Agrónomos, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid, Spain.
Belén BritoFrom the Centro de Biotecnología y Genómica de Plantas and Departamento de Biotecnología, Escuela Técnica Superior de Ingenieros Agrónomos, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid, Spain.
Juan ImperialFrom the Centro de Biotecnología y Genómica de Plantas and Departamento de Biotecnología, Escuela Técnica Superior de Ingenieros Agrónomos, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid, Spain, Consejo Superior de Investigaciones Científicas, Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid, Spain.
Tomás Ruiz-ArgüesoFrom the Centro de Biotecnología y Genómica de Plantas and Departamento de Biotecnología, Escuela Técnica Superior de Ingenieros Agrónomos, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid, Spain.
Jose M PalaciosFrom the Centro de Biotecnología y Genómica de Plantas and Departamento de Biotecnología, Escuela Técnica Superior de Ingenieros Agrónomos, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid, Spain, jose.palacios@upm.es.
Centre for Plant Biotechnology and Genomics · ESUniversidad Politécnica de Madrid · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

[NiFe] hydrogenases are key enzymes for the energy and redox metabolisms of different microorganisms. Synthesis of these metalloenzymes involves a complex series of biochemical reactions catalyzed by a plethora of accessory proteins, many of them required to synthesize and insert the unique NiFe(CN)2CO cofactor. HypC is an accessory protein conserved in all [NiFe] hydrogenase systems and involved in the synthesis and transfer of the Fe(CN)2CO cofactor precursor. Hydrogenase accessory proteins from bacteria-synthesizing hydrogenase in the presence of oxygen include HupK, a scaffolding protein with a moderate sequence similarity to the hydrogenase large subunit and proposed to participate as an intermediate chaperone in the synthesis of the NiFe cofactor. The endosymbiotic bacterium Rhizobium leguminosarum contains a single hydrogenase system that can be expressed under two different physiological conditions: free-living microaerobic cells (∼ 12 μm O2) and bacteroids from legume nodules (∼ 10-100 nm O2). We have used bioinformatic tools to model HupK structure and interaction of this protein with HypC. Site-directed mutagenesis at positions predicted as critical by the structural analysis have allowed the identification of HupK and HypC residues relevant for the maturation of hydrogenase. Mutant proteins altered in some of these residues show a different phenotype depending on the physiological condition tested. Modeling of HypC also predicts the existence of a stable HypC dimer whose presence was also demonstrated by immunoblot analysis. This study widens our understanding on the mechanisms for metalloenzyme biosynthesis in the presence of oxygen.

Indexed as

Bacterial ProteinsBase SequenceDNA PrimersElectrophoresis, Polyacrylamide GelHydrogenaseModels, MolecularOxygenProtein BindingRhizobium leguminosarumSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBacterial ProteinsDNA PrimershupK protein, Rhizobium leguminosarumHydrogenaseHypC protein, Bacterianickel-iron hydrogenaseOxygenHydrogenaseMetalloenzymeMolecular Modeling[NiFe] CofactorNitrogen FixationScaffold Protein

Identifiers

PMID24942742
PMCPMC4118084
OpenAlexW2026204003

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.