Evidence map›Paper›PMID 24942575›Full record

ArticleJournal of virology2014

Intercontinental dispersal of HIV-1 subtype B associated with transmission among men who have sex with men in Japan.

Yutaka Takebe, Yuki Naito, Jayna Raghwani, Esther Fearnhill, Takako Sano, Shigeru Kusagawa, Jean L Mbisa, Hongyi Zhang, Tetsuro Matano, Andrew J Leigh Brown and 4 more

Abstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Sun, sea and sex: a review of the sex tourism literature.Tropical diseases, travel medicine and vaccines · 2020
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Targeting HIV Prevention Based on Molecular Epidemiology Among Deeply Sampled Subnetworks of Men Who Have Sex With Men.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2015
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yutaka TakebeAIDS Research Center, National Institute of Infectious Diseases, Tokyo, Japan takebe@nih.go.jp.
Yuki NaitoDatabase Center for Life Science, Research Organization of Information and Systems, Shizuoka, Japan.
Jayna RaghwaniDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Esther FearnhillMRC Clinical Trials Unit at UCL, London, United Kingdom.
Takako SanoDivision of Microbiology, Kanagawa Prefectural Institute of Public Health, Kanagawa, Japan.
Shigeru KusagawaAIDS Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Jean L MbisaVirus Reference Department, Public Health England, London, United Kingdom.
Hongyi ZhangPHE Clinical Microbiology and Public Health Laboratory, Addenbrooke's Hospital, Cambridge, United Kingdom.
Tetsuro MatanoAIDS Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Andrew J Leigh BrownEvolutionary Genetics, Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.
Oliver G PybusDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
David DunnMRC Clinical Trials Unit at UCL, London, United Kingdom.
Makiko KondoDivision of Microbiology, Kanagawa Prefectural Institute of Public Health, Kanagawa, Japan.
UK Collaborative Group on HIV Drug Resistance

Funding

Medical Research Council G0900274Medical Research Council MC_UU_12023/15Wellcome Trust 095831
6 · The paper itself

Abstract

unlabelledTransmission clusters of HIV-1 subtype B uniquely associated with the epidemic among men who have sex with men (MSM) in East Asia have recently been identified. Using the Los Alamos HIV sequence database and the UK HIV drug resistance database, we explored possible links between HIV MSM epidemics in East Asia and the rest of the world by using phylogenetic and molecular clock analyses. We found that JP.MSM.B-1, a subtype B MSM variant that accounts for approximately one-third of the infections among Japanese MSM, was detected worldwide, in the United Kingdom (n=13), mainland China (n=3), the United States, Germany, Canada, and Taiwan (n=1 each). Interestingly, 10 United Kingdom samples plus two from Germany and the United States formed a distinct monophyletic subgroup within JP.MSM.B-1. The estimated divergence times of JP.MSM.B-1 and the latter subgroup were ∼1989 and ∼1999, respectively. These dates suggest that JP.MSM.B-1 was circulating for many years in Japan among MSM before disseminating to other countries, most likely through global MSM networks. A significant number of other Asian MSM HIV lineages were also detected in the UK HIV drug resistance database. Our study provides insight into the regional and global dispersal of Asian MSM HIV lineages. Further study of these strains is warranted to elucidate viral migration and the interrelationship of HIV epidemics on a global scale. IMPORTANCE: We previously identified several transmission clusters of HIV-1 subtype B uniquely associated with the epidemic among men who have sex with men (MSM) in East Asia. Using the Los Alamos HIV sequence database and the UK HIV drug resistance database, we explored the possible interplay of HIV MSM epidemics in the different geographic regions and found previously unrecognized interrelationships among the HIV-1 epidemics in East Asia, the United Kingdom, and the rest of the world. Our study provides insight into the regional and global dispersal of Asian MSM HIV lineages and highlights the importance of strengthening HIV monitoring efforts and the need for implementing effective control measures to reduce HIV transmission on a global scale.

Indexed as

Homosexuality, MalePandemicsAsiaCluster AnalysisEuropeGenotypeHIV-1HIV InfectionsHumansMaleMolecular EpidemiologyNorth AmericaPhylogeny

Identifiers

PMID24942575
PMCPMC4136369

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.