Evidence map›Paper›PMID 24942546›Full record

ArticleMolecular microbiology2014

Mutation of praR in Rhizobium leguminosarum enhances root biofilms, improving nodulation competitiveness by increased expression of attachment proteins.

Marijke Frederix, Anne Edwards, Anna Swiderska, Andrew Stanger, Ramakrishnan Karunakaran, Alan Williams, Pamela Abbruscato, Maria Sanchez-Contreras, Philip S Poole, J Allan Downie

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  7. Review
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  9. Review
  10. Biofilm architecture: An emerging synthetic biology target.Synthetic and systems biotechnology · 2020
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Rhizobia: from saprophytes to endosymbionts.Nature reviews. Microbiology · 2018
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Marijke FrederixDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Anne Edwards
Anna Swiderska
Andrew Stanger
Ramakrishnan Karunakaran
Alan Williams
Pamela Abbruscato
Maria Sanchez-Contreras
Philip S Poole
J Allan Downie
Norwich Research Park · GBJohn Innes Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E017045/1
6 · The paper itself

Abstract

In Rhizobium leguminosarum bv. viciae, quorum-sensing is regulated by CinR, which induces the cinIS operon. CinI synthesizes an AHL, whereas CinS inactivates PraR, a repressor. Mutation of praR enhanced biofilms in vitro. We developed a light (lux)-dependent assay of rhizobial attachment to roots and demonstrated that mutation of praR increased biofilms on pea roots. The praR mutant out-competed wild-type for infection of pea nodules in mixed inoculations. Analysis of gene expression by microarrays and promoter fusions revealed that PraR represses its own transcription and mutation of praR increased expression of several genes including those encoding secreted proteins (the adhesins RapA2, RapB and RapC, two cadherins and the glycanase PlyB), the polysaccharide regulator RosR, and another protein similar to PraR. PraR bound to the promoters of several of these genes indicating direct repression. Mutations in rapA2, rapB, rapC, plyB, the cadherins or rosR did not affect the enhanced root attachment or nodule competitiveness of the praR mutant. However combinations of mutations in rapA, rapB and rapC abolished the enhanced attachment and nodule competitiveness. We conclude that relief of PraR-mediated repression determines a lifestyle switch allowing the expression of genes that are important for biofilm formation on roots and the subsequent initiation of infection of legume roots.

Indexed as

Plant Root NodulationBacterial ProteinsBiofilmsGene Expression Regulation, BacterialMannansMicroarray AnalysisMutationOperonPisum sativumPlant RootsPolysaccharides, BacterialPromoter Regions, GeneticRhizobium leguminosarumSymbiosisTranscription Factors(1-6)-alpha-glucomannanBacterial ProteinsMannansPolysaccharides, BacterialTranscription Factors

Identifiers

PMID24942546
PMCPMC4149787
OpenAlexW1549940791

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.