ArticleThe New phytologist2014
Cross-species outlier detection reveals different evolutionary pressures between sister species.
Article in The New phytologist, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 33 citations in OpenAlex.
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- Contrasting levels of transcriptome-wide SNP diversity and adaptive molecular variation among conifers.Frontiers in plant science · 2025Article
- Assessing Mechanisms of Potential Local Adaptation Through a Seascape Genomic Approach in a Marine Gastropod, Littoraria flava.Genome biology and evolution · 2024Article
- The genomic and epigenetic footprint of local adaptation to variable climates in kiwifruit.Horticulture research · 2023Article
- The Role of Genetic Factors in the Differential Invasion Success of TwoFrontiers in plant science · 2022Article
- Using two retrotransposon-based marker systems (SRAP and REMAP) for genetic diversity analysis of Moroccan Argan tree.Molecular biology research communications · 2020Article
- Knowledge status and sampling strategies to maximize cost-benefit ratio of studies in landscape genomics of wild plants.Scientific reports · 2020Article
- Comparing Genomic Signatures of Selection Between the Abbassa Strain and Eight Wild Populations of Nile Tilapia (Frontiers in genetics · 2020Article
- Going with the flow: Intraspecific variation may act as a natural ally to counterbalance the impacts of global change for the riparian speciesEvolutionary applications · 2020Article
- Linking genotype to phenotype to identify genetic variation relating to host susceptibility in the mountain pine beetle system.Evolutionary applications · 2020Article
- Genetic Adaptation to Climate in White Spruce Involves Small to Moderate Allele Frequency Shifts in Functionally Diverse Genes.Genome biology and evolution · 2015Article
- Identification of outliers in a genomic scan for selection along environmental gradients in the bamboo locust, Ceracris kiangsu.Scientific reports · 2015Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Lodgepole pine (Pinus contorta var. latifolia) and jack pine (Pinus banksiana) hybridize in western Canada, an area of recent mountain pine beetle range expansion. Given the heterogeneity of the environment, and indications of local adaptation, there are many unknowns regarding the response of these forests to future outbreaks. To better understand this we aim to identify genetic regions that have adaptive potential. We used data collected on 472 single nucleotide polymorphism (SNP) loci from 576 tree samples collected across 13 lodgepole pine-dominated sites and four jack pine-dominated sites. We looked at the relationship of genetic diversity with the environment, and we identified candidate loci using both frequency-based (arlequin and bayescan) and correlation-based (matsam and bayenv) methods. We found contrasting relationships between environmental variation and genetic diversity for the species. While we identified a number of candidate outliers (34 in lodgepole pine, 25 in jack pine, and 43 interspecific loci), we did not find any loci in common between lodgepole and jack pine. Many of the outlier loci identified were correlated with environmental variation. Using rigorous criteria we have been able to identify potential outlier SNPs. We have also found evidence of contrasting environmental adaptations between lodgepole and jack pine which could have implications for beetle spread risk.
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