Evidence map›Paper›PMID 24940784›Full record

ArticleBiophysical journal2014

Rigidity, secondary structure, and the universality of the boson peak in proteins.

Stefania Perticaroli, Jonathan D Nickels, Georg Ehlers, Alexei P Sokolov

Abstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Design-Evolution Synergy Enables New-to-Nature Enzyme Chemistry.bioRxiv : the preprint server for biology · 2026
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  5. Low-frequency Raman spectra of amyloid fibrils.The Journal of chemical physics · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Stefania PerticaroliJoint Institute for Neutron Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee; Chemical and Materials Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee; Department of Chemistry, University of Tennessee, Knoxville, Tennessee.
Jonathan D NickelsJoint Institute for Neutron Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee; Department of Chemistry, University of Tennessee, Knoxville, Tennessee. Electronic address: nickelsjd@ornl.gov.
Georg EhlersQuantum Condensed Matter Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee.
Alexei P SokolovJoint Institute for Neutron Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee; Chemical and Materials Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee; Department of Chemistry, University of Tennessee, Knoxville, Tennessee.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Complementary neutron- and light-scattering results on nine proteins and amino acids reveal the role of rigidity and secondary structure in determining the time- and lengthscales of low-frequency collective vibrational dynamics in proteins. These dynamics manifest in a spectral feature, known as the boson peak (BP), which is common to all disordered materials. We demonstrate that BP position scales systematically with structural motifs, reflecting local rigidity: disordered proteins appear softer than α-helical proteins; which are softer than β-sheet proteins. Our analysis also reveals a universal spectral shape of the BP in proteins and amino acid mixtures; superimposable on the shape observed in typical glasses. Uniformity in the underlying physical mechanism, independent of the specific chemical composition, connects the BP vibrations to nanometer-scale heterogeneities, providing an experimental benchmark for coarse-grained simulations, structure/rigidity relationships, and engineering of proteins for novel applications.

Indexed as

Spectrum AnalysisAnimalsCattleGreen Fluorescent ProteinsModels, MolecularNeutron DiffractionProteinsProtein Structure, SecondaryScattering, RadiationSerum Albumin, BovineGreen Fluorescent ProteinsProteinsSerum Albumin, Bovine

Identifiers

PMID24940784
PMCPMC4070067

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.