Evidence map›Paper›PMID 24940621›Full record

ArticlePloS one2014

Comparative genome analysis reveals metabolic versatility and environmental adaptations of Sulfobacillus thermosulfidooxidans strain ST.

Xue Guo, Huaqun Yin, Yili Liang, Qi Hu, Xishu Zhou, Yunhua Xiao, Liyuan Ma, Xian Zhang, Guanzhou Qiu, Xueduan Liu

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  3. Transcriptomic Analysis of the StrainInternational journal of molecular sciences · 2025
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  7. Article
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  9. Article
  10. A Novel Inorganic Sulfur Compound MetabolizingFrontiers in microbiology · 2018
    Article
  11. Review
  12. Frontiers in microbiology · 2018
    Article
  13. Weak Iron Oxidation byFrontiers in microbiology · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Sulfur Metabolism Pathways inFrontiers in microbiology · 2016
    Article
  19. Omics on bioleaching: current and future impacts.Applied microbiology and biotechnology · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Xue GuoSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China.
Huaqun YinSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China.
Yili LiangSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China.
Qi HuSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China.
Xishu ZhouSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China.
Yunhua XiaoSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China.
Liyuan MaSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China.
Xian ZhangSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China.
Guanzhou QiuSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China.
Xueduan LiuSchool of Minerals Processing and Bioengineering, Central South University, Changsha, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China.
Central South University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genus Sulfobacillus is a cohort of mildly thermophilic or thermotolerant acidophiles within the phylum Firmicutes and requires extremely acidic environments and hypersalinity for optimal growth. However, our understanding of them is still preliminary partly because few genome sequences are available. Here, the draft genome of Sulfobacillus thermosulfidooxidans strain ST was deciphered to obtain a comprehensive insight into the genetic content and to understand the cellular mechanisms necessary for its survival. Furthermore, the expressions of key genes related with iron and sulfur oxidation were verified by semi-quantitative RT-PCR analysis. The draft genome sequence of Sulfobacillus thermosulfidooxidans strain ST, which encodes 3225 predicted coding genes on a total length of 3,333,554 bp and a 48.35% G+C, revealed the high degree of heterogeneity with other Sulfobacillus species. The presence of numerous transposases, genomic islands and complete CRISPR/Cas defence systems testifies to its dynamic evolution consistent with the genome heterogeneity. As expected, S. thermosulfidooxidans encodes a suit of conserved enzymes required for the oxidation of inorganic sulfur compounds (ISCs). The model of sulfur oxidation in S. thermosulfidooxidans was proposed, which showed some different characteristics from the sulfur oxidation of Gram-negative A. ferrooxidans. Sulfur oxygenase reductase and heterodisulfide reductase were suggested to play important roles in the sulfur oxidation. Although the iron oxidation ability was observed, some key proteins cannot be identified in S. thermosulfidooxidans. Unexpectedly, a predicted sulfocyanin is proposed to transfer electrons in the iron oxidation. Furthermore, its carbon metabolism is rather flexible, can perform the transformation of pentose through the oxidative and non-oxidative pentose phosphate pathways and has the ability to take up small organic compounds. It encodes a multitude of heavy metal resistance systems to adapt the heavy metal-containing environments.

Indexed as

Adaptation, PhysiologicalGenome, ArchaealClustered Regularly Interspaced Short Palindromic RepeatsEnergy MetabolismMetabolic Networks and PathwaysMolecular Sequence AnnotationPhylogenySequence Analysis, DNASulfolobus

Identifiers

PMID24940621
PMCPMC4062416
OpenAlexW2017118844

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.