Evidence map›Paper›PMID 24939988›Full record

ArticleeLife2014

Evolution of histone 2A for chromatin compaction in eukaryotes.

Benjamin R Macadangdang, Amit Oberai, Tanya Spektor, Oscar A Campos, Fang Sheng, Michael F Carey, Maria Vogelauer, Siavash K Kurdistani

Open access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Histone variant H2B.Z acetylation is necessary for maintenance ofbioRxiv : the preprint server for biology · 2023
    Article
  9. Protein arginine methylation in transcription and epigenetic regulation.Frontiers in epigenetics and epigenomics · 2023
    Review
  10. Article
  11. Organelle size scaling over embryonic development.Wiley interdisciplinary reviews. Developmental biology · 2020
    Review
  12. Review
  13. Article
  14. Article
  15. Mutational landscape of uterine and ovarian carcinosarcomas implicates histone genes in epithelial-mesenchymal transition.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  16. Biological Scaling Problems and Solutions in Amphibians.Cold Spring Harbor perspectives in biology · 2015
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Benjamin R MacadangdangDepartment of Biological Chemistry, University of California, Los Angeles, Los Angeles, United States.
Amit OberaiDepartment of Biological Chemistry, University of California, Los Angeles, Los Angeles, United States.
Tanya SpektorDepartment of Biological Chemistry, University of California, Los Angeles, Los Angeles, United States.
Oscar A CamposDepartment of Biological Chemistry, University of California, Los Angeles, Los Angeles, United States.
Fang ShengDepartment of Biological Chemistry, University of California, Los Angeles, Los Angeles, United States.
Michael F CareyDepartment of Biological Chemistry, University of California, Los Angeles, Los Angeles, United States.
Maria VogelauerDepartment of Biological Chemistry, University of California, Los Angeles, Los Angeles, United States.
Siavash K KurdistaniDepartment of Biological Chemistry, University of California, Los Angeles, Los Angeles, United States.
University of California, Los Angeles · USBroad Center · US

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
Virology CoreP30AI028697 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CUMBERLAND, WILLIAM GLEN · 1991 to 2018
$39.9M
Discovery of gut microbiota-targeted small molecules: new tools and therapeuticsDP2OD006515 · OD · STANFORD UNIVERSITY · PI SONNENBURG, JUSTIN L · 2009 to 2009
$2.4M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA016042NIAID NIH HHS P30 AI028697NIH HHS 1 DP2 OD006515NIH HHS DP2 OD006515
6 · The paper itself

Abstract

During eukaryotic evolution, genome size has increased disproportionately to nuclear volume, necessitating greater degrees of chromatin compaction in higher eukaryotes, which have evolved several mechanisms for genome compaction. However, it is unknown whether histones themselves have evolved to regulate chromatin compaction. Analysis of histone sequences from 160 eukaryotes revealed that the H2A N-terminus has systematically acquired arginines as genomes expanded. Insertion of arginines into their evolutionarily conserved position in H2A of a small-genome organism increased linear compaction by as much as 40%, while their absence markedly diminished compaction in cells with large genomes. This effect was recapitulated in vitro with nucleosomal arrays using unmodified histones, indicating that the H2A N-terminus directly modulates the chromatin fiber likely through intra- and inter-nucleosomal arginine-DNA contacts to enable tighter nucleosomal packing. Our findings reveal a novel evolutionary mechanism for regulation of chromatin compaction and may explain the frequent mutations of the H2A N-terminus in cancer.

Indexed as

Chromatin Assembly and DisassemblyEvolution, MolecularAnimalsArginineCell Line, TumorChromatinGenome, FungalHEK293 CellsHistonesHumansNeoplasmsNucleosomesProtein Structure, TertiarySaccharomyces cerevisiaeXenopus laevisArginineChromatinHistonesNucleosomesargininecell biologychromatinevolutionevolutionary biologygenomicshumanS. cerevisiaexenopus

Identifiers

PMID24939988
PMCPMC4098067
OpenAlexW2105119391

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.