Evidence map›Paper›PMID 24939875›Full record

ArticleGenes & development2014

piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells.

Dubravka Pezic, Sergei A Manakov, Ravi Sachidanandam, Alexei A Aravin

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed, 225 citations in OpenAlex.

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  11. A PIWI protein-dependent DNA N6-adenine methylation pathway inbioRxiv : the preprint server for biology · 2026
    Article
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84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Dubravka PezicDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA;
Sergei A ManakovDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA;
Ravi SachidanandamGenetics and Genomic Sciences, Mount Sinai School of Medicine, New York, New York 10029, USA.
Alexei A AravinDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA;
California Institute of Technology · USIcahn School of Medicine at Mount Sinai · US

Funding

Molecular Mechanism of the piRNA BiogenesisR01GM097363 · NIGMS · CORNELL UNIVERSITY · PI ARAVIN, ALEXEI A. · 2011 to 2025
$4.0M
Taming of Small RNA-based Epigenetic MechanismsDP2OD007371 · OD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ARAVIN, ALEXEI A. · 2010 to 2010
$2.4M
Functions of Piwi proteins and short RNAs in germlineR00HD057233 · NICHD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ARAVIN, ALEXEI A. · 2010 to 2012
$738k
NICHD NIH HHS R00 HD057233NIGMS NIH HHS R01 GM097363NIH HHS DP2 OD007371NIH HHS DP2 OD007371A
6 · The paper itself

Abstract

Transposable elements (TEs) occupy a large fraction of metazoan genomes and pose a constant threat to genomic integrity. This threat is particularly critical in germ cells, as changes in the genome that are induced by TEs will be transmitted to the next generation. Small noncoding piwi-interacting RNAs (piRNAs) recognize and silence a diverse set of TEs in germ cells. In mice, piRNA-guided transposon repression correlates with establishment of CpG DNA methylation on their sequences, yet the mechanism and the spectrum of genomic targets of piRNA silencing are unknown. Here we show that in addition to DNA methylation, the piRNA pathway is required to maintain a high level of the repressive H3K9me3 histone modification on long interspersed nuclear elements (LINEs) in germ cells. piRNA-dependent chromatin repression targets exclusively full-length elements of actively transposing LINE families, demonstrating the remarkable ability of the piRNA pathway to recognize active elements among the large number of genomic transposon fragments.

Indexed as

AnimalsChromatinCpG IslandsDNA MethylationGene Expression RegulationGene SilencingGenomeGerm CellsHistonesLong Interspersed Nucleotide ElementsMaleMiceMutationRNA, Small InterferingChromatinHistonesRNA, Small InterferingH3K9me3piRNAtransposon

Identifiers

PMID24939875
PMCPMC4083086
OpenAlexW2110100152

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.