Evidence map›Paper›PMID 24939590›Full record

ArticleEuropean journal of human genetics : EJHG2015

Novel mutations in PXDN cause microphthalmia and anterior segment dysgenesis.

Alex Choi, Richard Lao, Paul Ling-Fung Tang, Eunice Wan, Wasima Mayer, Tanya Bardakjian, Gary M Shaw, Pui-Yan Kwok, Adele Schneider, Anne Slavotinek

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. The life cycle of type IV collagen.Matrix biology : journal of the International Society for Matrix Biology · 2025
    Review
  3. Genetic Analysis ofBiomedicines · 2025
    Article
  4. Review
  5. Peroxidasin is required for full viability in development and for maintenance of tissue mechanics in adults.Matrix biology : journal of the International Society for Matrix Biology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Redox-Related Proteins in Melanoma Progression.Antioxidants (Basel, Switzerland) · 2022
    Article
  13. Article
  14. Peroxidasin-mediated bromine enrichment of basement membranes.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Biallelic Deletion ofInternational journal of molecular sciences · 2019
    Article
  20. Contribution of a NovelInternational journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Alex ChoiDepartment of Pediatrics, Division of Genetics, University of California, San Francisco, CA, USA.
Richard LaoCardiovascular Research Institute, University of California, San Francisco, CA, USA.
Paul Ling-Fung TangCardiovascular Research Institute, University of California, San Francisco, CA, USA.
Eunice WanCardiovascular Research Institute, University of California, San Francisco, CA, USA.
Wasima MayerDepartment of Pediatrics, Division of Genetics, University of California, San Francisco, CA, USA.
Tanya BardakjianDivision of Medical Genetics, Einstein Medical Center, Philadelphia, PA, USA.
Gary M ShawDivision of Neonatology and Developmental Medicine, Department of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA.
Pui-Yan KwokCardiovascular Research Institute, University of California, San Francisco, CA, USA.
Adele SchneiderDivision of Medical Genetics, Einstein Medical Center, Philadelphia, PA, USA.
Anne SlavotinekDepartment of Pediatrics, Division of Genetics, University of California, San Francisco, CA, USA.
University of California, San Francisco · USEinstein Medical Center Philadelphia · USStanford University · US

Funding

Gene Discovery in Human Anopthalmia/MicropthalmiaR21EY022779 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SLAVOTINEK, ANNE M. · 2012 to 2013
$421k
NEI NIH HHS R21 EY022779NEI NIH HHS R21EY022779-01
6 · The paper itself

Abstract

We used exome sequencing to study a non-consanguineous family with two children who had anterior segment dysgenesis, sclerocornea, microphthalmia, hypotonia and developmental delays. Sanger sequencing verified two Peroxidasin (PXDN) mutations in both sibs--a maternally inherited, nonsense mutation, c.1021C>T predicting p.(Arg341*), and a paternally inherited, 23-basepair deletion causing a frameshift and premature protein truncation, c.2375_2397del23, predicting p.(Leu792Hisfs*67). We re-examined exome data from 20 other patients with structural eye defects and identified two additional PXDN mutations in a sporadic male with bilateral microphthalmia, cataracts and anterior segment dysgenesis--a maternally inherited, frameshift mutation, c.1192delT, predicting p.(Tyr398Thrfs*40) and a paternally inherited, missense substitution that was predicted to be deleterious, c.947 A>C, predicting p.(Gln316Pro). Mutations in PXDN were previously reported in three families with congenital cataracts, microcornea, sclerocornea and developmental glaucoma. The gene is expressed in corneal epithelium and is secreted into the extracellular matrix. Defective peroxidasin has been shown to impair sulfilimine bond formation in collagen IV, a constituent of the basement membrane, implying that the eye defects result because of loss of basement membrane integrity in the developing eye. Our finding of a broader phenotype than previously appreciated for PXDN mutations is typical for exome-sequencing studies, which have proven to be highly effective for mutation detection in patients with atypical presentations. We conclude that PXDN sequencing should be considered in microphthalmia with anterior segment dysgenesis.

Indexed as

MutationAmino Acid SubstitutionAntigens, NeoplasmChild, PreschoolExomeEye AbnormalitiesHigh-Throughput Nucleotide SequencingHumansInfantMaleMicrophthalmosPedigreePeroxidasesPeroxidasinPhenotypeReceptors, Interleukin-1Antigens, NeoplasmPeroxidasesPeroxidasinPXDN protein, humanReceptors, Interleukin-1

Identifiers

PMID24939590
PMCPMC4326713
OpenAlexW1965334737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.