Evidence map›Paper›PMID 24938734›Full record

ArticleScientific reports2014

Lysine pyrrolation is a naturally-occurring covalent modification involved in the production of DNA mimic proteins.

Hiroaki Miyashita, Miho Chikazawa, Natsuki Otaki, Yusuke Hioki, Yuki Shimozu, Fumie Nakashima, Takahiro Shibata, Yoshihisa Hagihara, Shoichi Maruyama, Noriyoshi Matsumi and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Glycolaldehyde is an endogenous source of lysineThe Journal of biological chemistry · 2020
    Article
  10. Review
  11. Article
  12. Article
  13. Hypertension as an autoimmune and inflammatory disease.Hypertension research : official journal of the Japanese Society of Hypertension · 2016
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Hiroaki MiyashitaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Miho ChikazawaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Natsuki OtakiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Yusuke HiokiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Yuki ShimozuGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Fumie NakashimaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Takahiro Shibata1] Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan [2] PRESTO, Japan Science and Technology Agency (JST), Kawaguchi, Saitama 332-0012, Japan.
Yoshihisa HagiharaNational Institute of Advanced Industrial Science and Technology (AIST), Ikeda, Osaka 563-8577, Japan.
Shoichi MaruyamaDepartment of Nephrology, Graduate School of Medical Sciences, Nagoya University, Nagoya 466-8550, Japan.
Noriyoshi MatsumiSchool of Materials Science, Japan Advanced Institute of Science and Technology, Ishikawa 923-1292, Japan.
Koji UchidaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Nagoya University · JPJapan Advanced Institute of Science and Technology · JPNational Institute of Advanced Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Covalent modification of proteins exerts significant effects on their chemical properties and has important functional and regulatory consequences. We now report the identification and verification of an electrically-active form of modified proteins recognized by a group of small molecules commonly used to interact with DNA. This previously unreported property of proteins was initially discovered when the γ-ketoaldehydes were identified as a source of the proteins stained by the DNA intercalators. Using 1,4-butanedial, the simplest γ-ketoaldehyde, we characterized the structural and chemical criteria governing the recognition of the modified proteins by the DNA intercalators and identified N(ε)-pyrrolelysine as a key adduct. Unexpectedly, the pyrrolation conferred an electronegativity and electronic properties on the proteins that potentially constitute an electrical mimic to the DNA. In addition, we found that the pyrrolated proteins indeed triggered an autoimmune response and that the production of specific antibodies against the pyrrolated proteins was accelerated in human systemic lupus erythematosus. These findings and the apparent high abundance of N(ε)-pyrrolelysine in vivo suggest that protein pyrrolation could be an endogenous source of DNA mimic proteins, providing a possible link connecting protein turnover and immune disorders.

Indexed as

Protein Processing, Post-TranslationalAmino Acid SequenceAnimalsBenzothiazolesDiaminesDNAEthidiumFemaleFluorescent DyesHumansImmunoblottingLupus Erythematosus, SystemicLysineMaleMice, Inbred BALB CMice, Inbred MRL lprBenzothiazolesDiaminesDNAEthidiumFluorescent DyesLysineOrganic ChemicalsProteinsPyrrolesQuinolinesSYBR Green I

Identifiers

PMID24938734
PMCPMC4061549
OpenAlexW2036976587

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.