Evidence map›Paper›PMID 24936658›Full record

ArticlePloS one2014

The human orphan nuclear receptor tailless (TLX, NR2E1) is druggable.

Cindy Benod, Rosa Villagomez, Carly S Filgueira, Peter K Hwang, Paul G Leonard, Guillaume Poncet-Montange, Senapathy Rajagopalan, Robert J Fletterick, Jan-Åke Gustafsson, Paul Webb

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  6. Oleic acid is an endogenous ligand of TLX/NR2E1 that triggers hippocampal neurogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  9. Review
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  12. Aberrant transcriptomes and DNA methylomes define pathways that drive pathogenesis and loss of brain laterality/asymmetry in schizophrenia and bipolar disorder.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Cindy BenodDepartment of Genomic Medicine, Houston Methodist Research Institute (HMRI), Houston, Texas, United States of America.
Rosa VillagomezDepartment of Genomic Medicine, Houston Methodist Research Institute (HMRI), Houston, Texas, United States of America.
Carly S FilgueiraDepartment of Genomic Medicine, Houston Methodist Research Institute (HMRI), Houston, Texas, United States of America.
Peter K HwangDepartment of Biophysics and Biochemistry, University of California San Francisco, San Francisco, California, United States of America.
Paul G LeonardDepartment of Biochemistry and Molecular Biology, MD Anderson Cancer Center, University of Texas, Houston, Texas, United States of America; Center for Biomolecular Structure and Function, MD Anderson Cancer Center, University of Texas, Houston, Texas, United States of America.
Guillaume Poncet-MontangeDepartment of Biochemistry and Molecular Biology, MD Anderson Cancer Center, University of Texas, Houston, Texas, United States of America.
Senapathy RajagopalanDepartment of Genomic Medicine, Houston Methodist Research Institute (HMRI), Houston, Texas, United States of America.
Robert J FletterickDepartment of Biophysics and Biochemistry, University of California San Francisco, San Francisco, California, United States of America.
Jan-Åke GustafssonUniversity of Houston Center for Nuclear Receptors and Cell Signaling, Houston, Texas, United States of America.
Paul WebbDepartment of Genomic Medicine, Houston Methodist Research Institute (HMRI), Houston, Texas, United States of America.
Houston Methodist · USThe University of Texas MD Anderson Cancer Center · USUniversity of California, San Francisco · USUniversity of Houston · US

Funding

Structures of Protein Complexes Regulating Transcription in Enbryonic Stem CellsU01GM094614 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WEBB, PAUL · 2010 to 2014
$5.7M
NIDDK NIH HHS DK41482NIGMS NIH HHS U01 GM094614NIGMS NIH HHS UO1 GM094614-01
6 · The paper itself

Abstract

Nuclear receptors (NRs) are an important group of ligand-dependent transcriptional factors. Presently, no natural or synthetic ligand has been identified for a large group of orphan NRs. Small molecules to target these orphan NRs will provide unique resources for uncovering regulatory systems that impact human health and to modulate these pathways with drugs. The orphan NR tailless (TLX, NR2E1), a transcriptional repressor, is a major player in neurogenesis and Neural Stem Cell (NSC) derived brain tumors. No chemical probes that modulate TLX activity are available, and it is not clear whether TLX is druggable. To assess TLX ligand binding capacity, we created homology models of the TLX ligand binding domain (LBD). Results suggest that TLX belongs to an emerging class of NRs that lack LBD helices α1 and α2 and that it has potential to form a large open ligand binding pocket (LBP). Using a medium throughput screening strategy, we investigated direct binding of 20,000 compounds to purified human TLX protein and verified interactions with a secondary (orthogonal) assay. We then assessed effects of verified binders on TLX activity using luciferase assays. As a result, we report identification of three compounds (ccrp1, ccrp2 and ccrp3) that bind to recombinant TLX protein with affinities in the high nanomolar to low micromolar range and enhance TLX transcriptional repressive activity. We conclude that TLX is druggable and propose that our lead compounds could serve as scaffolds to derive more potent ligands. While our ligands potentiate TLX repressive activity, the question of whether it is possible to develop ligands to de-repress TLX activity remains open.

Indexed as

Amino Acid SequenceBinding SitesCOUP Transcription Factor IIDydrogesteroneEstrogen Receptor betaGenes, ReporterHeLa CellsHumansInhibitory Concentration 50LigandsLuciferases, RenillaModels, MolecularMolecular Sequence DataOrphan Nuclear ReceptorsPiperazinesProtein BindingCOUP Transcription Factor IIDydrogesteroneEstrogen Receptor betaLigandsLuciferases, RenillaNR2E1 protein, humanOrphan Nuclear ReceptorsPiperazinesPyrazolesReceptors, Cytoplasmic and NuclearRetinoid X Receptor alpha

Identifiers

PMID24936658
PMCPMC4060991
OpenAlexW1994853971

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.