Evidence map›Paper›PMID 24936067›Full record

ArticleThe Journal of biological chemistry2014

Structure of a novel O-linked N-acetyl-D-glucosamine (O-GlcNAc) transferase, GtfA, reveals insights into the glycosylation of pneumococcal serine-rich repeat adhesins.

Wei-Wei Shi, Yong-Liang Jiang, Fan Zhu, Yi-Hu Yang, Qiu-Yan Shao, Hong-Bo Yang, Yan-Min Ren, Hui Wu, Yuxing Chen, Cong-Zhao Zhou

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  5. Review
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  11. Glycosyltransferases within theJournal of bacteriology · 2021
    Article
  12. Review
  13. Review
  14. Identification ofFrontiers in endocrinology · 2019
    Article
  15. Article
  16. Structural basis for the glycosyltransferase activity of theThe Journal of biological chemistry · 2018
    Article
  17. Review
  18. Article
  19. Article
  20. Defining the enzymatic pathway for polymorphicThe Journal of biological chemistry · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Wei-Wei Shi
Yong-Liang Jiang
Fan Zhu
Yi-Hu Yang
Qiu-Yan Shao
Hong-Bo Yang
Yan-Min Ren
Hui Wu
Yuxing Chen
Cong-Zhao Zhou
Hefei National Center for Physical Sciences at Nanoscale · CNUniversity of Science and Technology of China · CNUniversity of Alabama at Birmingham · US

Funding

Glycosylation & Function of an Oral Streptococcal AdhesinR01DE017954 · NIDCR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WU, HUI · 2007 to 2022
$5.8M
Training in structural biology & glycobiologyF33DE022215 · NIDCR · IMPERIAL COLLEGE OF SCIENCE, TECHNOLOGY AND MEDICINE · PI WU, HUI · 2012 to 2012
$64k
NIDCR NIH HHS F33 DE022215NIDCR NIH HHS F33DE022215NIDCR NIH HHS R01 DE017954NIDCR NIH HHS R01DE 017954
6 · The paper itself

Abstract

Protein glycosylation catalyzed by the O-GlcNAc transferase (OGT) plays a critical role in various biological processes. In Streptococcus pneumoniae, the core enzyme GtfA and co-activator GtfB form an OGT complex to glycosylate the serine-rich repeat (SRR) of adhesin PsrP (pneumococcal serine-rich repeat protein), which is involved in the infection and pathogenesis. Here we report the 2.0 Å crystal structure of GtfA, revealing a β-meander add-on domain beyond the catalytic domain. It represents a novel add-on domain, which is distinct from the all-α-tetratricopeptide repeats in the only two structure-known OGTs. Structural analyses combined with binding assays indicate that this add-on domain contributes to forming an active GtfA-GtfB complex and recognizing the acceptor protein. In addition, the in vitro glycosylation system enables us to map the O-linkages to the serine residues within the first SRR of PsrP. These findings suggest that fusion with an add-on domain might be a universal mechanism for diverse OGTs that recognize varying acceptor proteins/peptides.

Indexed as

Adhesins, BacterialCrystallography, X-RayGlycosylationMultienzyme ComplexesProtein Structure, QuaternaryProtein Structure, TertiaryStreptococcus pneumoniaeTransaminasesAdhesins, BacterialMultienzyme ComplexesTransaminases

Identifiers

PMID24936067
PMCPMC4110296
OpenAlexW2006871857

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.