Evidence map›Paper›PMID 24934506›Full record

ArticleDiabetologia2014

GWAS identifies an NAT2 acetylator status tag single nucleotide polymorphism to be a major locus for skin fluorescence.

Karen M Eny, Helen L Lutgers, John Maynard, Barbara E K Klein, Kristine E Lee, Gil Atzmon, Vincent M Monnier, Jana V van Vliet-Ostaptchouk, Reindert Graaff, Pim van der Harst and 18 more

Open access · hybridAbstract read
In one paragraph

Article in Diabetologia, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 4 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 4 syntheses or guidelines pooled it, 67 citations in OpenAlex.

  1. Effects of FOXO3 Polymorphisms on Survival to Extreme Longevity in Four Centenarian Studies.The journals of gerontology. Series A, Biological sciences and medical sciences · 2018
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  10. Human N-acetyltransferase 2 (Frontiers in pharmacology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 4 countries.

Karen M EnyProgram in Genetics and Genomic Biology, Hospital for Sick Children, 686 Bay Street, Room 12.9830, Toronto, ON, M5G 0A4, Canada.
Helen L Lutgers
John Maynard
Barbara E K Klein
Kristine E Lee
Gil Atzmon
Vincent M Monnier
Jana V van Vliet-Ostaptchouk
Reindert Graaff
Pim van der Harst
Harold Snieder
Melanie M van der Klauw
David R Sell
S Mohsen Hosseini
Patricia A Cleary
Barbara H Braffett
Trevor J Orchard
Timothy J Lyons
Kerri Howard
Ronald Klein
Jill P Crandall
Nir Barzilai
Sofiya Milman
Danny Ben-Avraham
LifeLines Cohort Study Group
DCCT/EDIC Research Group
Bruce H R Wolffenbuttel
Andrew D Paterson
University Medical Center Groningen · NLAlbert Einstein College of Medicine · USGeorge Washington University · USHospital for Sick Children · CAQueen's University Belfast · GBUniversity of Pittsburgh · USUniversity of Toronto · CA

Funding

Limited Competition for the Continuation of Epidemiology of Diabetes Interventions and Complications (EDIC) Study Clinical Research Center (Collaborative U01)U01DK094157 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI Ionut Bebu, Barbara Halina Braffett · 2011 to 2026
$97.6M
University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR000114 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R · 2012 to 2015
$35.0M
Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
Epidemiology of Diabetes Interventions and Complications Data Coordinating CenterU01DK094176 · NIDDK · GEORGE WASHINGTON UNIVERSITY · PI BEBU, IONUT, BRAFFETT, BARBARA HALINA · 2012 to 2022
$30.8M
Stable Isotope and Metabolomics CoreP60DK020541 · NIDDK · YESHIVA UNIVERSITY · PI FLEISCHER, NORMAN S. · 1986 to 2014
$29.8M
TRANSGENIC COREP60DK020595 · NIDDK · UNIVERSITY OF CHICAGO · PI BELL, GRAEME I · 1985 to 2012
$25.5M
Einstein's Nathan Shock Center of Excellence in Basic Biology of AgingP30AG038072 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VIJG, JAN · 2010 to 2024
$10.8M
STATISTICS AND DATA MANAGEMENT COREP01AG027734 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LIPTON, RICHARD B. · 2007 to 2012
$9.3M
Training in Aging ResearchT32AG023475 · NIA · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI NIR J BARZILAI, DEREK Major HUFFMAN · 2004 to 2026
$8.6M
Epidemiology of Retinopathy and other Complications in Long Term Type 1 DiabetesR01EY016379 · NEI · UNIVERSITY OF WISCONSIN-MADISON · PI KLEIN, BARBARA EDEN, KLEIN, RONALD · 2005 to 2016
$7.0M
Clinical and Translational Science Award (UL1)UL1TR000086 · NCATS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SHAMOON, HARRY · 2012 to 2013
$5.5M
Genome-wide association of common alleles with long-term diabetic complicationsR01DK077510 · NIDDK · HOSPITAL FOR SICK CHLDRN (TORONTO) · PI PATERSON, ANDREW D · 2006 to 2008
$2.3M
NCATS NIH HHS 8UL1 TR000086NCATS NIH HHS KL2 TR001071NCATS NIH HHS UL1 TR000086NCATS NIH HHS UL1 TR000114NCATS NIH HHS UL1 TR000142NEI NIH HHS EY016379NEI NIH HHS R01 EY016379NIA NIH HHS P01 AG027734NIA NIH HHS P30 AG038072NIA NIH HHS P30AG038072NIA NIH HHS R01 1R01AG042188NIA NIH HHS R01 AG042188NIA NIH HHS T32 AG023475NIDDK NIH HHS DK-79432NIDDK NIH HHS N01-DK-6-2204NIDDK NIH HHS NIH-5P60 DK20541NIDDK NIH HHS P60 DK020541NIDDK NIH HHS P60 DK020595NIDDK NIH HHS P60-DK20595NIDDK NIH HHS R01 DK077489NIDDK NIH HHS R01-DK077489NIDDK NIH HHS R01 DK077510NIDDK NIH HHS R01-DK-077510NIDDK NIH HHS R21 DK079432NIDDK NIH HHS U01 DK094157NIDDK NIH HHS U01 DK094176
6 · The paper itself

Abstract

aims/hypothesisSkin fluorescence (SF) is a non-invasive marker of AGEs and is associated with the long-term complications of diabetes. SF increases with age and is also greater among individuals with diabetes. A familial correlation of SF suggests that genetics may play a role. We therefore performed parallel genome-wide association studies of SF in two cohorts.

methodsCohort 1 included 1,082 participants, 35-67 years of age with type 1 diabetes. Cohort 2 included 8,721 participants without diabetes, aged 18-90 years.

resultsrs1495741 was significantly associated with SF in Cohort 1 (p < 6 × 10(-10)), which is known to tag the NAT2 acetylator phenotype. The fast acetylator genotype was associated with lower SF, explaining up to 15% of the variance. In Cohort 2, the top signal associated with SF (p = 8.3 × 10(-42)) was rs4921914, also in NAT2, 440 bases upstream of rs1495741 (linkage disequilibrium r (2) = 1.0 for rs4921914 with rs1495741). We replicated these results in two additional cohorts, one with and one without type 1 diabetes. Finally, to understand which compounds are contributing to the NAT2-SF signal, we examined 11 compounds assayed from skin biopsies (n = 198): the fast acetylator genotype was associated with lower levels of the AGEs hydroimidazolones of glyoxal (p = 0.017). CONCLUSIONS/

interpretationWe identified a robust association between NAT2 and SF in people with and without diabetes. Our findings provide proof of principle that genetic variation contributes to interindividual SF and that NAT2 acetylation status plays a major role.

Indexed as

FluorescenceGenetic Predisposition to DiseasePolymorphism, Single NucleotideAcetylationAdolescentAdultAgedAged, 80 and overArylamine N-AcetyltransferaseFemaleGenome-Wide Association StudyGenotypeHumansMaleMiddle AgedPhenotypeArylamine N-AcetyltransferaseNAT2 protein, human

Identifiers

PMID24934506
PMCPMC4079945
OpenAlexW2148225370

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.