Evidence map›Paper›PMID 24931910›Full record

ArticleMicrobiologyOpen2014

σ(N) -dependent control of acid resistance and the locus of enterocyte effacement in enterohemorrhagic Escherichia coli is activated by acetyl phosphate in a manner requiring flagellar regulator FlhDC and the σ(S) antagonist FliZ.

Avishek Mitra, Pamela A Fay, Khoury W Vendura, Zimrisha Alla, Ronan K Carroll, Lindsey N Shaw, James T Riordan

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Regulation ofEcoSal Plus · 2017
    Review
  4. Article
  5. Article
  6. Glycolysis for Microbiome Generation.Microbiology spectrum · 2015
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Avishek MitraDepartment of Cell Biology, Microbiology and Molecular Biology, University of South Florida, Tampa, Florida, 33620.
Pamela A Fay
Khoury W Vendura
Zimrisha Alla
Ronan K Carroll
Lindsey N Shaw
James T Riordan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In enterohemorrhagic Escherichia coli (EHEC), sigma factor N (σ(N)) regulates glutamate-dependent acid resistance (GDAR) and the locus of enterocyte effacement (LEE); discrete genetic systems that are required for transmission and virulence of this intestinal pathogen. Regulation of these systems requires nitrogen regulatory protein C, NtrC, and is a consequence of NtrC-σ(N) -dependent reduction in the activity of sigma factor S (σ(S)). This study elucidates pathway components and stimuli for σ(N)-directed regulation of GDAR and the LEE in EHEC. Deletion of fliZ, the product of which reduces σ(S) activity, phenocopied rpoN (σ(N)) and ntrC null strains for GDAR and LEE control, acid resistance, and adherence. Upregulation of fliZ by NtrC-σ(N) was shown to be indirect and required an intact flagellar regulator flhDC. Activation of flhDC by NtrC-σ(N) and FlhDC-dependent regulation of GDAR and the LEE was dependent on σ(N)-promoter flhDP 2 , and a newly described NtrC upstream activator sequence. Addition of ammonium chloride significantly altered expression of GDAR and LEE, acid resistance, and adherence, independently of rpoN, ntrC, and the NtrC sensor kinase, ntrB. Altering the availability of NtrC phosphodonor acetyl phosphate by growth without glucose, with acetate addition, or by deletion of acetate kinase ackA, abrogated NtrC-σ(N)-dependent control of flhDC, fliZ, GDAR, and the LEE.

Indexed as

Gene Expression Regulation, BacterialPhosphoproteinsCarboxylic AcidsDrug ToleranceEnterohemorrhagic Escherichia coliEscherichia coli ProteinsGene DeletionGlutamatesOrganophosphatesRepressor ProteinsSigma FactorTrans-ActivatorsTranscriptional Activationacetyl phosphateCarboxylic AcidsEscherichia coli ProteinsflhC protein, E coliflhD protein, E coliFliZ protein, E coliGlutamatesLEE protein, E coliOrganophosphatesPhosphoproteinsRepressor ProteinsSigma FactorTrans-Activatorsacid resistanceEHEC O157H7LEENtrCrpoNsigma factor N

Identifiers

PMID24931910
PMCPMC4287178

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.