Evidence map›Paper›PMID 24931469›Full record

ArticleStructure (London, England : 1993)2014

Molecular basis of substrate recognition and degradation by human presequence protease.

John V King, Wenguang G Liang, Kathryn P Scherpelz, Alexander B Schilling, Stephen C Meredith, Wei-Jen Tang

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Microglial activation states and their implications for Alzheimer's Disease.The journal of prevention of Alzheimer's disease · 2025
    Review
  6. Article
  7. Article
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  17. Article
  18. Bacterial iron acquisition mediated by outer membrane translocation and cleavage of a host protein.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

John V KingBen May Department for Cancer Research, The University of Chicago, 929 E. 57(th) Street, Chicago, IL 60637, USA.
Wenguang G LiangBen May Department for Cancer Research, The University of Chicago, 929 E. 57(th) Street, Chicago, IL 60637, USA.
Kathryn P ScherpelzDepartment of Biochemistry and Molecular Biophysics, The University of Chicago, Chicago, IL 60637, USA.
Alexander B SchillingMass Spectrometry, Metabolomics, and Proteomics Facility, University of Illinois at Chicago, Chicago, IL 60612, USA.
Stephen C MeredithDepartment of Pathology, The University of Chicago, Chicago, IL 60637, USA.
Wei-Jen TangBen May Department for Cancer Research, The University of Chicago, 929 E. 57(th) Street, Chicago, IL 60637, USA. Electronic address: wtang@uchicago.edu.
University of Chicago · USUniversity of Illinois Chicago · US

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
Time resolved SAXS studies on the RP2/Arl3 complex pp.484-485P41GM103622 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2012 to 2020
$11.9M
Regulation and Catalysis of Human Insulin Degrading EnzymeR01GM081539 · NIGMS · UNIVERSITY OF CHICAGO · PI TANG, WEI-JEN · 2007 to 2015
$2.6M
Image based phenotypic profiling of single-cell responses to perturbationsR01GM081549 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI WU, LANI F · 2007 to 2011
$1.7M
NCATS NIH HHS UL1 TR000430NIGMS NIH HHS P41 GM103622NIGMS NIH HHS R01 GM081539NIGMS NIH HHS R01 GM081549NIGMS NIH HHS R01 GM81539NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

Human presequence protease (hPreP) is an M16 metalloprotease localized in mitochondria. There, hPreP facilitates proteostasis by utilizing an ∼13,300-Å(3) catalytic chamber to degrade a diverse array of potentially toxic peptides, including mitochondrial presequences and β-amyloid (Aβ), the latter of which contributes to Alzheimer disease pathogenesis. Here, we report crystal structures for hPreP alone and in complex with Aβ, which show that hPreP uses size exclusion and charge complementation for substrate recognition. These structures also reveal hPreP-specific features that permit a diverse array of peptides, with distinct distributions of charged and hydrophobic residues, to be specifically captured, cleaved, and have their amyloidogenic features destroyed. SAXS analysis demonstrates that hPreP in solution exists in dynamic equilibrium between closed and open states, with the former being preferred. Furthermore, Aβ binding induces the closed state and hPreP dimerization. Together, these data reveal the molecular basis for flexible yet specific substrate recognition and degradation by hPreP.

Indexed as

Amino Acid SequenceAmyloid beta-PeptidesCrystallography, X-RayHumansKineticsMitochondriaMitochondrial ProteinsModels, MolecularMolecular Sequence DataPeptidesProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryProteolysisScattering, Small AngleSequence Homology, Amino AcidAmyloid beta-PeptidesMitochondrial ProteinsPeptidesPREP protein, humanSerine Endopeptidases

Identifiers

PMID24931469
PMCPMC4128088
OpenAlexW2041339954

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.