Evidence map›Paper›PMID 24929829›Full record

ArticleNature genetics2014

Genome and transcriptome of the porcine whipworm Trichuris suis.

Aaron R Jex, Peter Nejsum, Erich M Schwarz, Li Hu, Neil D Young, Ross S Hall, Pasi K Korhonen, Shengguang Liao, Stig Thamsborg, Jinquan Xia and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 120 citations in OpenAlex.

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  11. The Effects ofMicroorganisms · 2023
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  13. Prevalences and Characteristics ofJournal of veterinary research · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 6 countries.

Aaron R JexFaculty of Veterinary Science, The University of Melbourne, Parkville, Victoria, Australia.
Peter NejsumUniversity of Copenhagen, Copenhagen, Denmark.
Erich M Schwarz1] Faculty of Veterinary Science, The University of Melbourne, Parkville, Victoria, Australia. [2] Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, USA.
Li HuBGI-Shenzhen, Shenzen, China.
Neil D YoungFaculty of Veterinary Science, The University of Melbourne, Parkville, Victoria, Australia.
Ross S HallFaculty of Veterinary Science, The University of Melbourne, Parkville, Victoria, Australia.
Pasi K KorhonenFaculty of Veterinary Science, The University of Melbourne, Parkville, Victoria, Australia.
Shengguang LiaoBGI-Shenzhen, Shenzen, China.
Stig ThamsborgUniversity of Copenhagen, Copenhagen, Denmark.
Jinquan XiaBGI-Shenzhen, Shenzen, China.
Pengwei XuBGI-Shenzhen, Shenzen, China.
Shaowei WangBGI-Shenzhen, Shenzen, China.
Jean-Pierre Y ScheerlinckFaculty of Veterinary Science, The University of Melbourne, Parkville, Victoria, Australia.
Andreas HofmannEskitis Institute for Cell and Molecular Therapies, Griffith University, Nathan, Queensland, Australia.
Paul W Sternberg1] Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California, USA. [2] Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Jun Wang1] BGI-Shenzhen, Shenzen, China. [2] Department of Biology, University of Copenhagen, Copenhagen, Denmark. [3] Princess Al Jawhara Albrahim Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, Saudi Arabia. [4] Macau University of Science and Technology, Taipa, Macau, China. [5] Department of Medicine, University of Hong Kong, Hong Kong.
Robin B GasserFaculty of Veterinary Science, The University of Melbourne, Parkville, Victoria, Australia.
University of Melbourne · AUUniversity of Copenhagen · DKGriffith University · AUHoward Hughes Medical Institute · USKing Abdulaziz University · SA

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Trichuris (whipworm) infects 1 billion people worldwide and causes a disease (trichuriasis) that results in major socioeconomic losses in both humans and pigs. Trichuriasis relates to an inflammation of the large intestine manifested in bloody diarrhea, and chronic disease can cause malnourishment and stunting in children. Paradoxically, Trichuris of pigs has shown substantial promise as a treatment for human autoimmune disorders, including inflammatory bowel disease (IBD) and multiple sclerosis. Here we report whole-genome sequencing at ∼140-fold coverage of adult male and female T. suis and ∼80-Mb draft assemblies. We explore stage-, sex- and tissue-specific transcription of mRNAs and small noncoding RNAs.

Indexed as

Gene Expression ProfilingGene Regulatory NetworksGenome, HelminthAnimalsFemaleHigh-Throughput Nucleotide SequencingHost-Parasite InteractionsHumansMaleSwineTrichuriasisTrichuris

Identifiers

PMID24929829
PMCPMC4105696
OpenAlexW2087587061

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.