Evidence map›Paper›PMID 24928879›Full record

ArticleApplied and environmental microbiology2014

Sporadic distribution and distinctive variations of cylindrospermopsin genes in cyanobacterial strains and environmental samples from Chinese freshwater bodies.

Yongguang Jiang, Peng Xiao, Gongliang Yu, Jihai Shao, Deming Liu, Sandra M F O Azevedo, Renhui Li

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Recent Advances in the Ecology of Bloom-FormingInternational journal of environmental research and public health · 2023
    Review
  3. Article
  4. Molecular Verification of Bloom-formingInternational journal of environmental research and public health · 2018
    Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Yongguang JiangKey Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People's Republic of China University of Chinese Academy of Sciences, Beijing, People's Republic of China.
Peng XiaoKey Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People's Republic of China University of Chinese Academy of Sciences, Beijing, People's Republic of China.
Gongliang YuKey Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People's Republic of China.
Jihai ShaoResources and Environment College, Hunan Agricultural University, Changsha, People's Republic of China.
Deming LiuHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, Hunan Agricultural University, Changsha, People's Republic of China.
Sandra M F O AzevedoInstituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Ilha do Fundão, Cidade Universitária, Rio de Janeiro, Brazil.
Renhui LiKey Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People's Republic of China reli@ihb.ac.cn.
Chinese Academy of Sciences · CNHunan Agricultural University · CNInstitute of Hydrobiology · CNUniversidade Federal do Rio de Janeiro · BRUniversity of Chinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Increasing reports of cylindrospermopsins (CYNs) in freshwater ecosystems have promoted the demand for identifying all of the potential CYN-producing cyanobacterial species. The present study explored the phylogenetic distribution and evolution of cyr genes in cyanobacterial strains and water samples from China. Four Cylindrospermopsis strains and two Raphidiopsis strains were confirmed to produce CYNs. Mutant cyrI and cyrK genes were observed in these strains. Cloned cyr gene sequences from eight water bodies were clustered with cyr genes from Cylindrospermopsis and Raphidiopsis (C/R group) in the phylogenetic trees with high similarities (99%). Four cyrI sequence types and three cyrJ sequence types were observed to have different sequence insertions and repeats. Phylogenetic analysis of the rpoC1 sequences of the C/R group revealed four conserved clades, namely, clade I, clade II, clade III, and clade V. High sequence similarities (>97%) in each clade and a divergent clade IV were observed. Therefore, CYN producers were sporadically distributed in congeneric and paraphyletic C/R group species in Chinese freshwater ecosystems. In the evolution of cyr genes, intragenomic translocations and intergenomic transfer between local Cylindrospermopsis and Raphidiopsis were emphasized and probably mediated by transposases. This research confirms the existence of CYN-producing Cylindrospermopsis in China and reveals the distinctive variations of cyr genes.

Indexed as

AlkaloidsBacterial ToxinsChinaCluster AnalysisCyanobacteriaCyanobacteria ToxinsDNA, BacterialFresh WaterGenotypeMetabolic Networks and PathwaysMolecular Sequence DataPhylogenyRecombination, GeneticSequence Analysis, DNASequence HomologyUracilAlkaloidsBacterial ToxinsCyanobacteria ToxinscylindrospermopsinDNA, BacterialUracil

Identifiers

PMID24928879
PMCPMC4136083
OpenAlexW2062897669

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.