Evidence map›Paper›PMID 24928878›Full record

ArticleApplied and environmental microbiology2014

Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.

Jaap S Sinninghe Damsté, W Irene C Rijpstra, Ellen C Hopmans, Bärbel U Foesel, Pia K Wüst, Jörg Overmann, Marcus Tank, Donald A Bryant, Peter F Dunfield, Karen Houghton and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 146 citations in OpenAlex.

  1. Identification ofApplied and environmental microbiology · 2026
    Article
  2. Article
  3. International journal of systematic and evolutionary microbiology · 2026
    Article
  4. International journal of systematic and evolutionary microbiology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Pheno- and Genotyping of Hopanoid Production inFrontiers in microbiology · 2017
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 5 countries.

Jaap S Sinninghe DamstéNIOZ-Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, Den Burg, the Netherlands jaap.damste@nioz.nl.
W Irene C RijpstraNIOZ-Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, Den Burg, the Netherlands.
Ellen C HopmansNIOZ-Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, Den Burg, the Netherlands.
Bärbel U FoeselDepartment of Microbial Ecology and Diversity Research, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Pia K WüstDepartment of Microbial Ecology and Diversity Research, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Jörg OvermannDepartment of Microbial Ecology and Diversity Research, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Marcus TankDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania, USA.
Donald A BryantDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania, USA.
Peter F DunfieldDepartment of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.
Karen HoughtonGNS Science, Extremophile Research Group, Taupo, New Zealand.
Matthew B StottGNS Science, Extremophile Research Group, Taupo, New Zealand.
Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DERoyal Netherlands Institute for Sea Research · NLGNS Science · NZPennsylvania State University · USUniversity of Calgary · CA

Funding

The role of chromatin structural and epigenetic changes in arsenic-induced gene expressionR01ES024478 · NIEHS · UNIVERSITY OF KENTUCKY · PI FONDUFE-MITTENDORF, YVONNE NSOKIKA · 2015 to 2019
$1.8M
NIEHS NIH HHS R01 ES024478
6 · The paper itself

Abstract

Recently, iso-diabolic acid (13,16-dimethyl octacosanedioic acid) has been identified as a major membrane-spanning lipid of subdivisions 1 and 3 of the Acidobacteria, a highly diverse phylum within the Bacteria. This finding pointed to the Acidobacteria as a potential source for the bacterial glycerol dialkyl glycerol tetraethers that occur ubiquitously in peat, soil, lakes, and hot springs. Here, we examined the lipid composition of seven phylogenetically divergent strains of subdivision 4 of the Acidobacteria, a bacterial group that is commonly encountered in soil. Acid hydrolysis of total cell material released iso-diabolic acid derivatives in substantial quantities (11 to 48% of all fatty acids). In contrast to subdivisions 1 and 3 of the Acidobacteria, 6 out of the 7 species of subdivision 4 (excepting "Candidatus Chloracidobacterium thermophilum") contained iso-diabolic acid ether bound to a glycerol in larger fractional abundance than iso-diabolic acid itself. This is in agreement with the analysis of intact polar lipids (IPLs) by high-performance liquid chromatography-mass spectrometry (HPLC-MS), which showed the dominance of mixed ether-ester glycerides. iso-Diabolic acid-containing IPLs were not identified, because these IPLs are not released with a Bligh-Dyer extraction, as observed before when studying lipid compositions of subdivisions 1 and 3 of the Acidobacteria. The presence of ether bonds in the membrane lipids does not seem to be an adaptation to temperature, because the five mesophilic isolates contained a larger amount of ether lipids than the thermophile "Ca. Chloracidobacterium thermophilum." Furthermore, experiments with Pyrinomonas methylaliphatogenes did not reveal a major influence of growth temperature over the 50 to 69°C range.

Indexed as

AcidobacteriaChromatography, High Pressure LiquidCytosolDicarboxylic AcidsDNA, BacterialEnvironmental MicrobiologyEstersEthersLipidsMass SpectrometryMolecular Sequence DataSequence Analysis, DNAdiabolic acidsDicarboxylic AcidsDNA, BacterialEstersEthersLipids

Identifiers

PMID24928878
PMCPMC4136120
OpenAlexW2151815565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.