Evidence map›Paper›PMID 24928416›Full record

ArticleBMC microbiology2014

Differential efficiency in exogenous DNA acquisition among closely related Salmonella strains: implications in bacterial speciation.

Hong-Xia Bao, Le Tang, Lu Yu, Xu-Yao Wang, Yang Li, Xia Deng, Yong-Guo Li, Ang Li, Da-Ling Zhu, Randal N Johnston and 3 more

Abstract read
In one paragraph

Article in BMC microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Landscape ofFrontiers in microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Hong-Xia Bao
Le Tang
Lu Yu
Xu-Yao Wang
Yang Li
Xia Deng
Yong-Guo Li
Ang Li
Da-Ling Zhu
Randal N Johnston
Gui-Rong LiuGenomics Research Center (one of The State-Province Key Laboratories of Biomedicine-Pharmaceutics of China), Harbin Medical University, 157 Baojian Road, Harbin 150081, China. grliu.natsumi@gmail.com.
Ye Feng
Shu-Lin Liu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAcquisition of exogenous genetic material is a key event in bacterial speciation. It seems reasonable to assume that recombination of the incoming DNA into genome would be more efficient with higher levels of relatedness between the DNA donor and recipient. If so, bacterial speciation would be a smooth process, leading to a continuous spectrum of genomic divergence of bacteria, which, however, is not the case as shown by recent findings. The goal of this study was todetermine if DNA transfer efficiency is correlated with the levels of sequence identity.

resultsTo compare the relative efficiency of exogenous DNA acquisition among closely related bacteria, we carried out phage-mediated transduction and plasmid-mediated transformation in representative Salmonella strains with different levels of relatedness. We found that the efficiency was remarkably variable even among genetically almost identical bacteria. Although there was a general tendency that more closely related DNA donor-recipient pairs had higher transduction efficiency, transformation efficiency exhibited over a thousand times difference among the closely related Salmonella strains.

conclusionDNA acquisition efficiency is greatly variable among bacteria that have as high as over 99% identical genetic background, suggesting that bacterial speciation involves highly complex processes affected not only by whether beneficial exogenous DNA may exist in the environment but also the "readiness" of the bacteria to accept it.

Indexed as

Recombination, GeneticTransduction, GeneticDNADNA, BacterialGenetic SpeciationMolecular Sequence DataSalmonellaSequence Analysis, DNATransformation, BacterialDNADNA, Bacterial

Identifiers

PMID24928416
PMCPMC4094785

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.