Evidence map›Paper›PMID 24927296›Full record

ArticleOncology reports2014

Differential promoter methylation of kinesin family member 1a in plasma is associated with breast cancer and DNA repair capacity.

Rafael Guerrero-Preston, Tal Hadar, Kimberly Laskie Ostrow, Ethan Soudry, Miguel Echenique, Carmen Ili-Gangas, Gabriela Pérez, Jimena Perez, Priscilla Brebi-Mieville, José Deschamps and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Oncology reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
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  11. Identification of m6A-Related Biomarkers Associated with Prognosis of Colorectal Cancer.Medical science monitor : international medical journal of experimental and clinical research · 2021
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  18. Disease markers · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Rafael Guerrero-PrestonDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Tal HadarDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Kimberly Laskie OstrowDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Ethan SoudryDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Miguel EcheniqueCancer Center, Auxilio Mutuo Hospital, San Juan, Puerto Rico.
Carmen Ili-GangasDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Gabriela PérezDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Jimena PerezDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Priscilla Brebi-MievilleDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
José DeschampsDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Luisa MoralesDepartment of Pharmacology and Toxicology, Ponce School of Medicine and Health Sciences, Ponce 00732-7004, Puerto Rico.
Manuel BayonaPublic Health Program, Ponce School of Medicine and Health Sciences, Ponce 00732-7004, Puerto Rico.
David SidranskyDepartment of Otolaryngology - Head and Neck Cancer Research Division, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA.
Jaime MattaDepartment of Pharmacology and Toxicology, Ponce School of Medicine and Health Sciences, Ponce 00732-7004, Puerto Rico.
Johns Hopkins Medicine · USJohns Hopkins University · USPonce Health Sciences University · PRAuxilio Mutuo Hospital · PR

Funding

INTEGRATED DEVELOPMENT OF NOVEL MOLECULAR MARKERSU01CA084986 · NCI · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 1999 to 2014
$33.8M
TUMOR SUPPRESOR GENE PROMOTER HYPERMETHYLATION FOR DETECTION OF HEAD AND NECKP50DE019032 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI WESTRA, WILLIAM H · 2007 to 2016
$27.1M
Therapeutic Immunization in Monkey Model of AIDSS06GM008239 · NIGMS · PONCE SCHOOL OF MEDICINE · PI MATTA, JAIME L · 1989 to 2009
$21.5M
Factors associated with variability in DNA repair capacity in their effect on breSC1CA182846 · NCI · PONCE SCHOOL OF MEDICINE · PI MATTA, JAIME L · 2013 to 2016
$1.5M
Molecular epidemiology studies on the role of DNA repair breast cancerSC1CA157250 · NCI · PONCE SCHOOL OF MEDICINE · PI MATTA, JAIME L · 2010 to 2012
$1.0M
Epigenomic Markers of HNSCC Survival Across Ethnic GroupsK01CA164092 · NCI · JOHNS HOPKINS UNIVERSITY · PI GUERRERO-PRESTON, RAFAEL · 2011 to 2014
$530k
BHP HRSA HHS SC1-SA157250-01NCI NIH HHS 9SC1CA182846-04NCI NIH HHS K01 CA164092NCI NIH HHS K01CA164092NCI NIH HHS SC1 CA157250NCI NIH HHS SC1 CA182846NCI NIH HHS U01 CA084986NCI NIH HHS U01CA84986NIDCR NIH HHS P50 DE019032NIGMS NIH HHS S06 GM008239NIGMS NIH HHS S06 GM008239-20
6 · The paper itself

Abstract

Methylation alterations of CpG islands, CpG island shores and first exons are key events in the formation and progression of human cancer, and an increasing number of differentially methylated regions and genes have been identified in breast cancer. Recent studies of the breast cancer methylome using deep sequencing and microarray platforms are providing a novel insight on the different roles aberrant methylation plays in molecular subtypes of breast cancer. Accumulating evidence from a subset of studies suggests that promoter methylation of tumor-suppressor genes associated with breast cancer can be quantified in circulating DNA. However, there is a paucity of studies that examine the combined presence of genetic and epigenetic alterations associated with breast cancer using blood-based assays. Dysregulation of DNA repair capacity (DRC) is a genetic risk factor for breast cancer that has been measured in lymphocytes. We isolated plasma DNA from 340 participants in a breast cancer case control project to study promoter methylation levels of five genes previously shown to be associated with breast cancer in frozen tissue and in cell line DNA: MAL, KIF1A, FKBP4, VGF and OGDHL. Methylation of at least one gene was found in 49% of the cases compared to 20% of the controls. Three of the four genes had receiver characteristic operator curve values of ≥ 0.50: MAL (0.64), KIF1A (0.51) and OGDHL (0.53). KIF1A promoter methylation was associated with breast cancer and inversely associated with DRC. This is the first evidence of a significant association between genetic and epigenetic alterations in breast cancer using blood-based tests. The potential diagnostic utility of these biomarkers and their relevance for breast cancer risk prediction should be examined in larger cohorts.

Indexed as

DNA MethylationDNA RepairAdultAgedAged, 80 and overBreast NeoplasmsCase-Control StudiesEpigenesis, GeneticFemaleHumansKinesinsMiddle AgedMyelin and Lymphocyte-Associated Proteolipid ProteinsNerve Growth FactorsPromoter Regions, GeneticTacrolimus Binding ProteinsKIF1A protein, humanKinesinsMAL protein, humanMyelin and Lymphocyte-Associated Proteolipid ProteinsNerve Growth Factorstacrolimus binding protein 4Tacrolimus Binding ProteinsVGF protein, human

Identifiers

PMID24927296
PMCPMC4091885
OpenAlexW2153323048

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.