ArticleFrontiers in plant science2014
Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers.
Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Genome-wide survey and expression analysis of peptides containing tyrosine sulfation (PSY) gene family in Cicer arietinum L.BMC genomics · 2026Article
- GWAS for QTLs associated with agronomic traits in Chickpea (Cicer arietinum L.) harvested in South-East Kazakhstan.BMC plant biology · 2025Article
- An overview of heat stress in Chickpea (Molecular breeding : new strategies in plant improvement · 2025Review
- Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.).The plant genome · 2024Article
- Genetic Diversity, Population Structure, and Environmental Adaptation Signatures of Chinese Coastal Hard-Shell MusselInternational journal of molecular sciences · 2023Article
- Genome-wide discovery of di-nucleotide SSR markers based on whole genome re-sequencing data of Cicer arietinum L. and Cicer reticulatum Ladiz.Scientific reports · 2023Article
- Metal-Resistant PGPR StrainPlants (Basel, Switzerland) · 2023Article
- Article
- Molecular Breeding and Drought Tolerance in Chickpea.Life (Basel, Switzerland) · 2022Review
- Article
- Advances in studies on ion transporters involved in salt tolerance and breeding crop cultivars with high salt tolerance.Journal of Zhejiang University. Science. B · 2020Review
- Characterization of ASR gene and its role in drought tolerance in chickpea (Cicer arietinum L.).PloS one · 2020Article
- Identification of Allelic Variation in Drought Responsive Dehydrin Gene Based on Sequence Similarity in Chickpea (Frontiers in genetics · 2020Article
- Nucleotide diversity patterns at the DREB1 transcriptional factor gene in the genome donor species of wheat (Triticum aestivum L).PloS one · 2019Article
- Development and evaluation of high-density AxiomPlant biotechnology journal · 2018Article
- Using Biotechnology-Led Approaches to Uplift Cereal and Food Legume Yields in Dryland Environments.Frontiers in plant science · 2018Review
- VrDREB2A, a DREB-binding transcription factor from Vigna radiata, increased drought and high-salt tolerance in transgenic Arabidopsis thaliana.Journal of plant research · 2016Article
- Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.).BMC plant biology · 2016Article
- Genome-Enabled Prediction Models for Yield Related Traits in Chickpea.Frontiers in plant science · 2016Article
- Mining and Analysis of SNP in Response to Salinity Stress in Upland Cotton (Gossypium hirsutum L.).PloS one · 2016Article
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9 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Chickpea is an important food legume crop for the semi-arid regions, however, its productivity is adversely affected by various biotic and abiotic stresses. Identification of candidate genes associated with abiotic stress response will help breeding efforts aiming to enhance its productivity. With this objective, 10 abiotic stress responsive candidate genes were selected on the basis of prior knowledge of this complex trait. These 10 genes were subjected to allele specific sequencing across a chickpea reference set comprising 300 genotypes including 211 genotypes of chickpea mini core collection. A total of 1.3 Mbp sequence data were generated. Multiple sequence alignment (MSA) revealed 79 SNPs and 41 indels in nine genes while the CAP2 gene was found to be conserved across all the genotypes. Among 10 candidate genes, the maximum number of SNPs (34) was observed in abscisic acid stress and ripening (ASR) gene including 22 transitions, 11 transversions and one tri-allelic SNP. Nucleotide diversity varied from 0.0004 to 0.0029 while polymorphism information content (PIC) values ranged from 0.01 (AKIN gene) to 0.43 (CAP2 promoter). Haplotype analysis revealed that alleles were represented by more than two haplotype blocks, except alleles of the CAP2 and sucrose synthase (SuSy) gene, where only one haplotype was identified. These genes can be used for association analysis and if validated, may be useful for enhancing abiotic stress, including drought tolerance, through molecular breeding.
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