Evidence map›Paper›PMID 24924803›Full record

ArticlePloS one2014

The PXR rs7643645 polymorphism is associated with the risk of higher prostate-specific antigen levels in prostate cancer patients.

Octavio D Reyes-Hernández, Libia Vega, Miguel A Jiménez-Ríos, Pedro F Martínez-Cervera, Juan A Lugo-García, Leticia Hernández-Cadena, Patricia Ostrosky-Wegman, Lorena Orozco, Guillermo Elizondo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Association betweenBioscience reports · 2018
    Pooled it
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  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Octavio D Reyes-HernándezLaboratorio de Genética y Diagnóstico Molecular, Hospital Juárez de México, México, D.F., México.
Libia VegaDepartamento de Toxicología, Centro de Investigación y Estudios Avanzados del Instituto Politécnico Nacional, México, D.F., México.
Miguel A Jiménez-RíosDepartamento de Urología, Instituto Nacional de Cancerología, México, D.F., México.
Pedro F Martínez-CerveraDepartamento de Urología, Instituto Nacional de Cancerología, México, D.F., México.
Juan A Lugo-GarcíaLaboratorio de Genética y Diagnóstico Molecular, Hospital Juárez de México, México, D.F., México.
Leticia Hernández-CadenaDepartamento de Salud Ambiental, Instituto Nacional de Salud Pública, México, D.F., México.
Patricia Ostrosky-WegmanInstituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México, D.F., México.
Lorena OrozcoLaboratorio de Inmunogenómica y Enfermedades Metabólicas, Instituto Nacional de Medicina Genómica, México, D.F., México.
Guillermo ElizondoDepartamento de Biología Celular, Centro de Investigación y Estudios Avanzados del Instituto Politécnico Nacional, México, D.F., México.
Hospital Juárez de México · MXInstituto Nacional de Cancerología · MXInstituto Politécnico Nacional · MXInstituto Nacional de Salud Pública · MXNational Institute of Genomic Medicine · MXUniversidad Nacional Autónoma de México · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Levels of enzymes that determine testosterone catabolism such as CYP3A4 have been associated with prostate cancer (PCa) risk. Although some studies have related CYP3A4*1B allele, a gene polymorphism that modifies CYP3A4 expression level, with PCa risk, others have failed, suggesting that additional genetic variants may be involved. Expression of CYP3A4 is largely due to the activation of Pregnane X Receptor (PXR). Particularly, rs2472677 and rs7643645 PXR polymorphisms modify CYP3A4 expression levels. To evaluate whether PXR-HNF3β/T (rs2472677), PXR-HNF4/G (rs7643645), and CYP3A4*1B (rs2740574) polymorphisms are associated with PCa a case control-study was performed. The multiple testing analysis showed that the PXR-HNF4/G polymorphism was associated with higher levels of prostate-specific antigen (PSA) in patients with PCa (OR = 3.99, p = 0.03). This association was stronger in patients diagnosed at the age of 65 years or older (OR = 10.8, p = 0.006). Although the CYP3A4*1B/*1B genotype was overrepresented in PCa patients, no differences were observed in the frequency of this and PXR-HNF3β/T alleles between controls and cases. Moreover, no significant association was found between these polymorphisms and PSA, Gleason grade, or tumor lymph node metastasis.

Indexed as

Polymorphism, Single NucleotideAgedAllelesCase-Control StudiesCytochrome P-450 CYP3AGene Expression Regulation, EnzymologicGene Expression Regulation, NeoplasticGenetic Association StudiesGenetic Predisposition to DiseaseHumansKallikreinsMaleMiddle AgedPregnane X ReceptorProstate-Specific AntigenProstatic NeoplasmsCytochrome P-450 CYP3AKallikreinsKLK3 protein, humanPregnane X ReceptorProstate-Specific AntigenReceptors, Steroid

Identifiers

PMID24924803
PMCPMC4055777
OpenAlexW1998880657

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.