Evidence map›Paper›PMID 24923822›Full record

ArticleDatabase : the journal of biological databases and curation2014

MorusDB: a resource for mulberry genomics and genome biology.

Tian Li, Xiwu Qi, Qiwei Zeng, Zhonghuai Xiang, Ningjia He

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Alternative splicing of theForestry research · 2024
    Article
  7. Article
  8. The MulberryInternational journal of molecular sciences · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. MMHub, a database for the mulberry metabolome.Database : the journal of biological databases and curation · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tian LiState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China.
Xiwu QiState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China.
Qiwei ZengState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China.
Zhonghuai XiangState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China.
Ningjia HeState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China hejia@swu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mulberry is an important cultivated plant that has received the attention of biologists interested in sericulture and plant-insect interaction. Morus notabilis, a wild mulberry species with a minimal chromosome number is an ideal material for whole-genome sequencing and assembly. The genome and transcriptome of M. notabilis were sequenced and analyzed. In this article, a web-based and open-access database, the Morus Genome Database (MorusDB), was developed to enable easy-to-access and data mining. The MorusDB provides an integrated data source and an easy accession of mulberry large-scale genomic sequencing and assembly, predicted genes and functional annotations, expressed sequence tags (ESTs), transposable elements (TEs), Gene Ontology (GO) terms, horizontal gene transfers between mulberry and silkworm and ortholog and paralog groups. Transcriptome sequencing data for M. notabilis root, leaf, bark, winter bud and male flower can also be searched and downloaded. Furthermore, MorusDB provides an analytical workbench with some built-in tools and pipelines, such as BLAST, Search GO, Mulberry GO and Mulberry GBrowse, to facilitate genomic studies and comparative genomics. The MorusDB provides important genomic resources for scientists working with mulberry and other Moraceae species, which include many important fruit crops. Designed as a basic platform and accompanied by the SilkDB, MorusDB strives to be a comprehensive platform for the silkworm-mulberry interaction studies. Database URL: http://morus.swu.edu.cn/morusdb.

Indexed as

Databases, GeneticDNA Transposable ElementsGene OntologyGenes, PlantGenome, PlantGenomicsInternetMorusSearch EngineSequence Homology, Nucleic AcidTranscriptomeDNA Transposable Elements

Identifiers

PMID24923822
PMCPMC4416113

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.