Evidence map›Paper›PMID 24923680›Full record

ArticleThe New phytologist2014

Involvement of YODA and mitogen activated protein kinase 6 in Arabidopsis post-embryogenic root development through auxin up-regulation and cell division plane orientation.

Veronika Smékalová, Ivan Luptovčiak, George Komis, Olga Šamajová, Miroslav Ovečka, Anna Doskočilová, Tomáš Takáč, Pavol Vadovič, Ondřej Novák, Tibor Pechan and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The New phytologist, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Dual regulations of cell cycle regulator DPa by auxin inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Plants (Basel, Switzerland) · 2023
    Article
  10. Asymmetric cell division in plant development.Journal of integrative plant biology · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. MPK6 Kinase Regulates Plasma Membrane HInternational journal of molecular sciences · 2021
    Article
  18. Article
  19. TALEN-BasedFrontiers in plant science · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Veronika SmékalováCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Ivan LuptovčiakCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
George KomisCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Olga ŠamajováCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Miroslav OvečkaCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Anna DoskočilováCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Tomáš TakáčCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Pavol VadovičCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Ondřej NovákCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Metabolomics, Laboratory of Growth Regulators, Institute of Experimental Botany ASCR & Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Tibor PechanInstitute for Genomics, Biocomputing & Biotechnology, Mississippi State University, 2 Research Boulevard, Starkville, MS, 39762, USA.
Anja ZiemannInstitute of Cellular and Molecular Botany, University of Bonn, Kirschallee 1, 53115, Bonn, Germany.
Petra KošútováCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Jozef ŠamajCentre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science, Palacký University, Šlechtitelů 11, 783 71, Olomouc, Czech Republic.
Palacký University Olomouc · CZBiocom · USCzech Academy of Sciences, Institute of Experimental Botany · CZUniversity of Bonn · DE

Funding

Training and Mentoring Core P20GM103476 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MICHAEL R GARRETT · 2012 to 2026
$60.2M
NIGMS NIH HHS P20 GM103476
6 · The paper itself

Abstract

The role of YODA MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 4 (MAPKKK4) upstream of MITOGEN ACTIVATED PROTEIN KINASE 6 (MPK6) was studied during post-embryonic root development of Arabidopsis thaliana. Loss- and gain-of-function mutants of YODA (yda1 and ΔNyda1) were characterized in terms of root patterning, endogenous auxin content and global proteomes. We surveyed morphological and cellular phenotypes of yda1 and ΔNyda1 mutants suggesting possible involvement of auxin. Endogenous indole-3-acetic acid (IAA) levels were up-regulated in both mutants. Proteomic analysis revealed up-regulation of auxin biosynthetic enzymes tryptophan synthase and nitrilases in these mutants. The expression, abundance and phosphorylation of MPK3, MPK6 and MICROTUBULE ASSOCIATED PROTEIN 65-1 (MAP65-1) were characterized by quantitative polymerase chain reaction (PCR) and western blot analyses and interactions between MAP65-1, microtubules and MPK6 were resolved by quantitative co-localization studies and co-immunoprecipitations. yda1 and ΔNyda1 mutants showed disoriented cell divisions in primary and lateral roots, abortive cytokinesis, and differential subcellular localization of MPK6 and MAP65-1. They also showed deregulated expression of TANGLED1 (TAN1), PHRAGMOPLAST ORIENTING KINESIN 1 (POK1), and GAMMA TUBULIN COMPLEX PROTEIN 4 (GCP4). The findings that MPK6 localized to preprophase bands (PPBs) and phragmoplasts while the mpk6-4 mutant transformed with MPK6AEF (alanine (A)-glutamic acid (E)-phenylanine (F)) showed a root phenotype similar to that of yda1 demonstrated that MPK6 is an important player downstream of YODA. These data indicate that YODA and MPK6 are involved in post-embryonic root development through an auxin-dependent mechanism regulating cell division and mitotic microtubule (PPB and phragmoplast) organization.

Indexed as

Cell DivisionUp-RegulationArabidopsisArabidopsis ProteinsCytokinesisFluorescent Antibody TechniqueIndoleacetic AcidsInterphaseMAP Kinase Kinase KinasesMeristemMicrotubulesMitogen-Activated Protein KinasesMitosisMutationPhenotypePhosphorylationalpha-(2,4-dimethylphenylethyl-2-oxo)indole-3-acetic acidArabidopsis ProteinsIndoleacetic AcidsMAP Kinase Kinase KinasesMitogen-Activated Protein KinasesMPK6 protein, ArabidopsisYODA protein, ArabidopsisArabidopsiscell division planeMAP65-1MAPKKKmicrotubulesMPK6rootYODA

Identifiers

PMID24923680
PMCPMC4414326
OpenAlexW2121159953

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.