Evidence map›Paper›PMID 24920772›Full record

ArticleJournal of clinical microbiology2014

Vacuolating cytotoxin genotypes are strong markers of gastric cancer and duodenal ulcer-associated Helicobacter pylori strains: a matched case-control study.

Ameer A Memon, Nawfal R Hussein, Véronique Y Miendje Deyi, Alain Burette, John C Atherton

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
10.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 67 citations in OpenAlex.

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  12. Inhibitory Effects of β-Caryophyllene onInternational journal of molecular sciences · 2020
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  13. How doesWorld journal of gastroenterology · 2019
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  15. H. pylori-associated pathologic findings among Alaska native patients.International journal of circumpolar health · 2018
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  16. World journal of gastroenterology · 2018
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  18. Helicobacter pylori as an oncogenic pathogen, revisited.Expert reviews in molecular medicine · 2017
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  19. Role ofGastroenterology research and practice · 2017
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Ameer A MemonNottingham Digestive Diseases Biomedical Research Unit, Queen's Medical Centre, University of Nottingham, Nottingham, United Kingdom, and Centre for Biomolecular Sciences, University of Nottingham, Nottingham, United Kingdom ameer.afzal@gmail.com.
Nawfal R HusseinNottingham Digestive Diseases Biomedical Research Unit, Queen's Medical Centre, University of Nottingham, Nottingham, United Kingdom, and Centre for Biomolecular Sciences, University of Nottingham, Nottingham, United Kingdom.
Véronique Y Miendje DeyiLaboratory of Microbiology, Centre Hospitalier Universitaire Brugmann, Brussels, Belgium.
Alain BuretteDepartment of Gastroenterology, Centre Hospitalier Interrégional Edith Cavell/Site de la Basilique, Brussels, Belgium.
John C AthertonNottingham Digestive Diseases Biomedical Research Unit, Queen's Medical Centre, University of Nottingham, Nottingham, United Kingdom, and Centre for Biomolecular Sciences, University of Nottingham, Nottingham, United Kingdom.
Queen's Medical Centre · GBCentre Hospitalier Interrégional Edith Cavell · BECentre Hospitalier Universitaire Brugmann · BEUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Helicobacter pylori virulence gene, cagA, and active forms of the vacuolating cytotoxin gene, vacA, are major determinants of pathogenesis. However, previous studies linking these factors to disease risk have often included patients using aspirin/nonsteroidal anti-inflammatory agents (NSAIDs) or acid-suppressing drugs, both of which may confound results. Also, particularly for gastric cancer (GC), controls have often been of quite different ages. Here, we performed a careful study in a "clean" Belgian population with gastric cancer cases age and sex matched to 4 controls and with a parallel duodenal ulcer (DU) group. As in other populations, there was a close association between the presence of cagA and the vacA s1 genotype. For GC, associations were found for vacA s1-positive (P = 0.01, odds ratio [OR], 9.37; 95% confidence interval [CI], 1.16 to 201.89), i1-positive (P = 0.003; OR, 12.08; 95% CI, 1.50 to 259.64), and cagA-positive status (P < 0.05; OR, infinity; 95% CI, 0.76 to infinity). For DU, associations were found with vacA s1 (P = 0.002; OR, 6.04; 95% CI, 1.52 to 27.87) and i1 (P = 0.004; OR, 4.35; 95% CI, 1.36 to 14.78) status but not with cagA status. Neither condition showed independent associations with the vacA m1 allele or with more biologically active forms of cagA with longer 3' variable regions. In this Belgian population, the best markers of gastric cancer- and duodenal ulcer-associated strains are the vacA s1 and i1 genotypes. This fits with experimental data showing that the s and i regions are the key determinants of vacuolating cytotoxin activity.

Indexed as

AdultAgedAged, 80 and overAntigens, BacterialBacterial ProteinsBase CompositionBelgiumCase-Control StudiesDuodenal UlcerFemaleGene FrequencyGenotypeHelicobacter InfectionsHelicobacter pyloriHumansMaleAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriVacA protein, Helicobacter pylori

Identifiers

PMID24920772
PMCPMC4136171
OpenAlexW2094764267

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.