Evidence map›Paper›PMID 24920672›Full record

ArticleThe Journal of biological chemistry2014

Insight into the architecture of the NuRD complex: structure of the RbAp48-MTA1 subcomplex.

Saad S M Alqarni, Andal Murthy, Wei Zhang, Marcin R Przewloka, Ana P G Silva, Aleksandra A Watson, Sara Lejon, Xue Y Pei, Arne H Smits, Susan L Kloet and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

  1. The potential role of PHF6 as an oncogene: a genotranscriptomic/proteomic meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Pooled it
  2. Article
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  5. Review
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  12. Rbbp4 loss disrupts neural progenitor cell cycle regulation independent of Rb and leads to Tp53 acetylation and apoptosis.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  13. Article
  14. Article
  15. Structure Based Design of Bicyclic Peptide Inhibitors of RbAp48.Angewandte Chemie (International ed. in English) · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Saad S M AlqarniFrom the School of Molecular Bioscience, University of Sydney, New South Wales 2006, Australia.
Andal MurthyDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, United Kingdom.
Wei ZhangDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, United Kingdom.
Marcin R PrzewlokaDepartment of Genetics, University of Cambridge, CB2 3EH, United Kingdom.
Ana P G SilvaFrom the School of Molecular Bioscience, University of Sydney, New South Wales 2006, Australia.
Aleksandra A WatsonDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, United Kingdom.
Sara LejonDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, United Kingdom.
Xue Y PeiDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, United Kingdom.
Arne H SmitsDepartment of Molecular Cancer Research, UMC Utrecht, Universiteitsweg 100, 3584CG Utrecht, The Netherlands, and.
Susan L KloetDepartment of Molecular Cancer Research, UMC Utrecht, Universiteitsweg 100, 3584CG Utrecht, The Netherlands, and.
Hongxin WangChildren's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104.
Nicholas E ShepherdFrom the School of Molecular Bioscience, University of Sydney, New South Wales 2006, Australia.
Philippa H StokesFrom the School of Molecular Bioscience, University of Sydney, New South Wales 2006, Australia.
Gerd A BlobelChildren's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104.
Michiel VermeulenDepartment of Molecular Cancer Research, UMC Utrecht, Universiteitsweg 100, 3584CG Utrecht, The Netherlands, and.
David M GloverDepartment of Genetics, University of Cambridge, CB2 3EH, United Kingdom.
Joel P MackayFrom the School of Molecular Bioscience, University of Sydney, New South Wales 2006, Australia, joel.mackay@sydney.edu.au.
Ernest D LaueDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, United Kingdom, e.d.laue@bioc.cam.ac.uk.
University of Cambridge · GBChildren's Hospital of Philadelphia · USUniversity Medical Center Utrecht · NLCancer Genomics Centre · NL

Funding

DROSOPHILA GENOMICS RESOURCE CENTERP40OD010949 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Andrew Zelhof · 2012 to 2026
$9.4M
Cancer Research UK 11431Cancer Research UK C3/A11431Medical Research Council G1001696NIH HHS OD010949-10NIH HHS P40 OD010949Wellcome TrustWellcome Trust 076846/Z/05/AWellcome Trust 082010/Z/07/ZWellcome Trust 092441/Z/10/Z
6 · The paper itself

Abstract

The nucleosome remodeling and deacetylase (NuRD) complex is a widely conserved transcriptional co-regulator that harbors both nucleosome remodeling and histone deacetylase activities. It plays a critical role in the early stages of ES cell differentiation and the reprogramming of somatic to induced pluripotent stem cells. Abnormalities in several NuRD proteins are associated with cancer and aging. We have investigated the architecture of NuRD by determining the structure of a subcomplex comprising RbAp48 and MTA1. Surprisingly, RbAp48 recognizes MTA1 using the same site that it uses to bind histone H4, showing that assembly into NuRD modulates RbAp46/48 interactions with histones. Taken together with other results, our data show that the MTA proteins act as scaffolds for NuRD complex assembly. We further show that the RbAp48-MTA1 interaction is essential for the in vivo integration of RbAp46/48 into the NuRD complex.

Indexed as

Amino Acid SequenceAnimalsChromatin Assembly and DisassemblyConserved SequenceCrystallography, X-RayHistone DeacetylasesHistonesHumansMi-2 Nucleosome Remodeling and Deacetylase ComplexModels, MolecularMolecular Sequence DataNuclear ProteinsNucleosomesProtein Interaction Domains and MotifsRepressor ProteinsRetinoblastoma-Binding Protein 4Histone DeacetylasesHistonesMi-2 Nucleosome Remodeling and Deacetylase ComplexMTA1 protein, humanNuclear ProteinsNucleosomesRBBP4 protein, humanRBBP7 protein, humanRepressor ProteinsRetinoblastoma-Binding Protein 4Retinoblastoma-Binding Protein 7Trans-ActivatorsTranscription FactorsZFPM1 protein, humanChromatinChromatin StructureGene RegulationMTA1NuRD ComplexProtein AssemblyProtein StructureRbAp48RBBP4

Identifiers

PMID24920672
PMCPMC4139204
OpenAlexW1975098321

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.