Evidence map›Paper›PMID 24920590›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

DNA looping-dependent autorepression of LEE1 P1 promoters by Ler in enteropathogenic Escherichia coli (EPEC).

Abhayprasad Bhat, Minsang Shin, Jae-Ho Jeong, Hyun-Ju Kim, Hyung-Ju Lim, Joon Haeng Rhee, Soon-Young Paik, Kunio Takeyasu, Toru Tobe, Hilo Yen and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Type Three Secretion System in Attaching and Effacing Pathogens.Frontiers in cellular and infection microbiology · 2016
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Abhayprasad BhatDepartment of Microbiology, Chonnam National University Medical School, Kwangju 501-746, South Korea;
Minsang ShinDepartment of Microbiology, Chonnam National University Medical School, Kwangju 501-746, South Korea;Laboratory of Plasma Membrane and Nuclear Signaling, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan;
Jae-Ho JeongDepartment of Microbiology, Chonnam National University Medical School, Kwangju 501-746, South Korea;
Hyun-Ju KimDepartment of Microbiology, Chonnam National University Medical School, Kwangju 501-746, South Korea;
Hyung-Ju LimDepartment of Microbiology, Chonnam National University Medical School, Kwangju 501-746, South Korea;
Joon Haeng RheeDepartment of Microbiology, Chonnam National University Medical School, Kwangju 501-746, South Korea;
Soon-Young PaikDepartment of Microbiology, College of Medicine, The Catholic University of Korea, Seoul, 137-701, Republic of Korea;
Kunio TakeyasuLaboratory of Plasma Membrane and Nuclear Signaling, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan;
Toru TobeDepartment of Biomedical Informatics and.
Hilo YenDepartment of Microbiology and Immunology, Osaka University Graduate School of Medicine, Suita, Osaka 565-0871, Japan; and.
Gwangrog LeeSingle Molecule Biology Laboratory, School of Life Sciences, Gwangju Institute of Science and Technology, Buk-gu, Gwangju 500-712, Republic of Korea.
Hyon E ChoyDepartment of Microbiology, Chonnam National University Medical School, Kwangju 501-746, South Korea; hyonchoy@jnu.ac.kr.
Chonnam National University · KRKyoto University · JPCatholic University of Korea · KRGwangju Institute of Science and Technology · KROsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ler, a homolog of H-NS in enteropathogenic Escherichia coli (EPEC), plays a critical role in the expression of virulence genes encoded by the pathogenic island, locus of enterocyte effacement (LEE). Although Ler acts as an antisilencer of multiple LEE operons by alleviating H-NS-mediated silencing, it represses its own expression from two LEE1 P1 promoters, P1A and P1B, that are separated by 10 bp. Various in vitro biochemical methods were used in this study to elucidate the mechanism underlying transcription repression by Ler. Ler acts through two AATT motifs, centered at position -111.5 on the coding strand and at +65.5 on the noncoding strand, by simultaneously repressing P1A and P1B through DNA-looping. DNA-looping was visualized using atomic force microscopy. It is intriguing that an antisilencing protein represses transcription, not by steric exclusion of RNA polymerase, but by DNA-looping. We propose that the DNA-looping prevents further processing of open promoter complex (RPO) at these promoters during transcription initiation.

Indexed as

DNA, BacterialEnteropathogenic Escherichia coliEscherichia coli ProteinsGenetic LociOperonResponse ElementsTrans-ActivatorsTranscription Initiation, GeneticDNA, BacterialEscherichia coli ProteinsLer protein, E coliTrans-ActivatorsDNA-bendingfirst phosphodiester bond formationroad block transcript

Identifiers

PMID24920590
PMCPMC4078829
OpenAlexW2164259411

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.