Evidence map›Paper›PMID 24920555›Full record

ArticleProteomics. Clinical applications2014

Cardiac extracellular proteome profiling and membrane topology analysis using glycoproteomics.

Yuan Tian, Tejaswi Koganti, Zhihao Yao, Presley Cannon, Punit Shah, Laura Pietrovito, Alessandra Modesti, Paul Aiyetan, Kristine DeLeon-Pennell, Yonggang Ma and 4 more

Abstract read
In one paragraph

Article in Proteomics. Clinical applications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Reduced myocyte complex N-glycosylation causes dilated cardiomyopathy.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  7. The Mouse Heart Attack Research Tool 1.0 database.American journal of physiology. Heart and circulatory physiology · 2018
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Review
  18. Heavy hitting: Using water to label humans.Proteomics. Clinical applications · 2014
    Article
  19. Altered protein levels in the isolated extracellular matrix of failing human hearts with dilated cardiomyopathy.Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yuan TianSan Antonio Cardiovascular Proteomics Center, San Antonio, TX, USA; Mississippi Center for Heart Research, Department of Physiology and Biophysics, University of Mississippi Medical Center, Jackson, MS, USA; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Tejaswi Koganti
Zhihao Yao
Presley Cannon
Punit Shah
Laura Pietrovito
Alessandra Modesti
Paul Aiyetan
Kristine DeLeon-Pennell
Yonggang Ma
Ganesh V Halade
Chindo Hicks
Hui Zhang
Merry L Lindsey

Funding

STRUCTURAL VASCULAR ADAPTATION OF THE MICROCIRCULATIONP01HL051971 · NHLBI · UNIVERSITY OF MISSISSIPPI MEDICAL CENTER · PI HALL, JOHN E · 1993 to 2018
$39.4M
The role of leptin in autoimmune-associated hypertensionP20GM104357 · NIGMS · UNIVERSITY OF MISSISSIPPI MED CTR · PI TAYLOR, ERIN BASSFORD · 2013 to 2022
$23.4M
Shared Resource CoresP01HL107153 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI KASS, DAVID ALAN · 2011 to 2017
$16.8M
PATHOBIOLOGY OF OCCLUSIVE VASCULAR DISEASET32HL007446 · NHLBI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Jean Chrisostome Bopassa · 1985 to 2026
$8.9M
The Role of Macrophage-derived MMPs in LV RemodelingR01HL075360 · NHLBI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LINDSEY, MERRY L. · 2004 to 2018
$5.4M
DHA Mechanisms in Obesity-mediated Cardiac Remodeling Post-Myocardial InfarctionR00AT006704 · NCCIH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HALADE, GANESH V · 2013 to 2015
$717k
Neutrophil Polarization Following Myocardial InfarctionI01BX000505 · VA · VETERANS HEALTH ADMINISTRATION · PI LINDSEY, MERRY L. · 2009 to 2024
–
BLRD VA I01 BX000505NCCIH NIH HHS R00 AT006704NCCIH NIH HHS R00AT006704NHLBI NIH HHS HHSN268201000032CNHLBI NIH HHS HHSN268201000036CNHLBI NIH HHS HL051971NHLBI NIH HHS P01 HL051971NHLBI NIH HHS P01 HL107153NHLBI NIH HHS R01 HL075360NHLBI NIH HHS T32 HL007446NHLBI NIH HHS T32 HL074464NIGMS NIH HHS GM104357NIGMS NIH HHS P20 GM104357PHS HHS 268201000036C
6 · The paper itself

Abstract

purposeExtracellular proteins are easily accessible, which presents a subproteome of molecular targets that have high diagnostic and therapeutic potential. Efforts have been made to catalog the cardiac extracellular matridome and analyze the topology of identified proteins for the design of therapeutic targets. Although many bioinformatics tools have been developed to predict protein topology, topology has been experimentally validated for only a very small portion of membrane proteins. The aim of this study was to use a glycoproteomics and MS approach to identify glycoproteins in the extracellular matridome of the infarcted left ventricle (LV) and provide experimental evidence for topological determination. EXPERIMENTAL

designGlycoproteomics analysis was performed on eight biological replicates of LV samples from wild-type mice at 7 days following myocardial infarction using SPE of glycopeptides, followed by mass spectrometric identification of N-linked glycosylation sites for topology assessment.

resultsWe identified hundreds of glycoproteins, and the identified N-glycosylation sites provide novel information on the correct topology for membrane proteins present in the infarct setting. CONCLUSIONS AND CLINICAL RELEVANCE: Our data provide the foundation for future studies of the LV infarct extracellular matridome, which may facilitate the discovery of drug targets and biomarkers.

Indexed as

ProteomicsAnimalsBinding SitesCell MembraneExtracellular SpaceFemaleGlycoproteinsGlycosylationHeart VentriclesMaleMiceMice, Inbred C57BLMyocardial InfarctionGlycoproteinsExtracellular matridomeGlycoproteinLeft ventricleMatrix metalloproteinaseMembrane orientationMyocardial infarction

Identifiers

PMID24920555
PMCPMC4212811

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.