Evidence map›Paper›PMID 24920373›Full record

ArticleBMC plant biology2014

The pathogenesis-related protein PR-4b from Theobroma cacao presents RNase activity, Ca(2+) and Mg(2+) dependent-DNase activity and antifungal action on Moniliophthora perniciosa.

Sara Pereira Menezes, Edson Mario de Andrade Silva, Eline Matos Lima, Aurizângela Oliveira de Sousa, Bruno Silva Andrade, Livia Santos Lima Lemos, Karina Peres Gramacho, Abelmon da Silva Gesteira, Carlos Priminho Pirovani, Fabienne Micheli

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
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  14. Overexpression ofFrontiers in microbiology · 2017
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  16. A Chitin-binding Protein Purified fromFrontiers in microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Sara Pereira Menezes
Edson Mario de Andrade Silva
Eline Matos Lima
Aurizângela Oliveira de Sousa
Bruno Silva Andrade
Livia Santos Lima Lemos
Karina Peres Gramacho
Abelmon da Silva Gesteira
Carlos Priminho Pirovani
Fabienne MicheliDepartamento de Ciências Biológicas (DCB), Centro de Biotecnologia e Genética (CBG), Universidade Estadual de Santa Cruz (UESC), Rodovia Ilhéus-Itabuna, km 16, 45662-900 Ilhéus, BA, Brazil. fabienne.micheli@cirad.fr.
Universidade Estadual de Santa Cruz · BRComissão Executiva do Plano da Lavoura Cacaueira · BRBrazilian Agricultural Research Corporation · BRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRSouthwest Bahia State University · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe production and accumulation of pathogenesis-related proteins (PR proteins) in plants in response to biotic or abiotic stresses is well known and is considered as a crucial mechanism for plant defense. A pathogenesis-related protein 4 cDNA was identified from a cacao-Moniliophthora perniciosa interaction cDNA library and named TcPR-4b.

resultsTcPR-4b presents a Barwin domain with six conserved cysteine residues, but lacks the chitin-binding site. Molecular modeling of TcPR-4b confirmed the importance of the cysteine residues to maintain the protein structure, and of several conserved amino acids for the catalytic activity. In the cacao genome, TcPR-4b belonged to a small multigene family organized mainly on chromosome 5. TcPR-4b RT-qPCR analysis in resistant and susceptible cacao plants infected by M. perniciosa showed an increase of expression at 48 hours after infection (hai) in both cacao genotypes. After the initial stage (24-72 hai), the TcPR-4b expression was observed at all times in the resistant genotypes, while in the susceptible one the expression was concentrated at the final stages of infection (45-90 days after infection). The recombinant TcPR-4b protein showed RNase, and bivalent ions dependent-DNase activity, but no chitinase activity. Moreover, TcPR-4b presented antifungal action against M. perniciosa, and the reduction of M. perniciosa survival was related to ROS production in fungal hyphae.

conclusionTo our knowledge, this is the first report of a PR-4 showing simultaneously RNase, DNase and antifungal properties, but no chitinase activity. Moreover, we showed that the antifungal activity of TcPR-4b is directly related to RNase function. In cacao, TcPR-4b nuclease activities may be related to the establishment and maintenance of resistance, and to the PCD mechanism, in resistant and susceptible cacao genotypes, respectively.

Indexed as

AgaricalesAmino Acid SequenceAntifungal AgentsBase SequenceBayes TheoremCacaoCalciumChitinasesDeoxyribonucleasesDisease ResistanceGene Expression Regulation, PlantGenotypeMagnesiumMicrobial ViabilityModels, MolecularMolecular Sequence DataAntifungal AgentsCalciumChitinasesDeoxyribonucleasesMagnesiumPlant ProteinsRecombinant ProteinsRibonucleases

Identifiers

PMID24920373
PMCPMC4079191
OpenAlexW2014506962

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.