Evidence map›Paper›PMID 24919147›Full record

ArticleNature2014

The genome of Eucalyptus grandis.

Alexander A Myburg, Dario Grattapaglia, Gerald A Tuskan, Uffe Hellsten, Richard D Hayes, Jane Grimwood, Jerry Jenkins, Erika Lindquist, Hope Tice, Diane Bauer and 70 more

Open access · hybridAbstract read
PubMed Publisher
In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 351 papers.

0numbers the graph read from it
0cells of the map it votes in
351citing papers in PubMed
38.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

351 citing papers in PubMed, 972 citations in OpenAlex.

  1. Integrative Techniques for Hybrid Breeding inPlants (Basel, Switzerland) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. FlavonoidInternational journal of molecular sciences · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Genome-wide identification, characterization andFrontiers in plant science · 2026
    Article
  19. Article
  20. Article

291 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

80 authors at 20 institutions in 8 countries.

Alexander A Myburg1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
Dario Grattapaglia1] Laboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil [2] Programa de Ciências Genômicas e Biotecnologia - Universidade Católica de Brasília SGAN 916, 70790-160 Brasília, Brazil.
Gerald A Tuskan1] US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA [2] Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Uffe HellstenUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Richard D HayesUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Jane GrimwoodHudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, Alabama 35801, USA.
Jerry JenkinsHudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, Alabama 35801, USA.
Erika LindquistUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Hope TiceUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Diane BauerUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
David M GoodsteinUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Inna DubchakUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Alexandre PoliakovUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Eshchar Mizrachi1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
Anand R K Kullan1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
Steven G Hussey1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
Desre Pinard1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
Karen van der Merwe1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
Pooja Singh1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
Ida van JaarsveldBioinformatics and Computational Biology Unit, Department of Biochemistry, University of Pretoria, Pretoria, Private bag X20, Pretoria 0028, South Africa.
Orzenil B Silva-JuniorLaboratório de Bioinformática, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
Roberto C TogawaLaboratório de Bioinformática, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
Marilia R PappasLaboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
Danielle A FariaLaboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
Carolina P SansaloniLaboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
Cesar D PetroliLaboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
Xiaohan YangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Priya RanjanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Timothy J TschaplinskiBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Chu-Yu YeBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Ting LiBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Lieven SterckDepartment of Plant Biotechnology and Bioinformatics (VIB), Ghent University, Technologiepark 927, B-9000 Ghent, Belgium.
Kevin VannesteDepartment of Plant Biotechnology and Bioinformatics (VIB), Ghent University, Technologiepark 927, B-9000 Ghent, Belgium.
Florent MuratINRA/UBP UMR 1095, 5 Avenue de Beaulieu, 63100 Clermont Ferrand, France.
Marçal SolerLaboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
Hélène San ClementeLaboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
Naijib SaidiLaboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
Hua Cassan-WangLaboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
Christophe DunandLaboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
Charles A Hefer1] Bioinformatics and Computational Biology Unit, Department of Biochemistry, University of Pretoria, Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Department of Botany, University of British Columbia, 3529-6270 University Blvd, Vancouver V6T 1Z4, Canada.
Erich Bornberg-BauerEvolutionary Bioinformatics, Institute for Evolution and Biodiversity, University of Muenster, Huefferstrasse 1, D-48149, Muenster, Germany.
Anna R Kersting1] Evolutionary Bioinformatics, Institute for Evolution and Biodiversity, University of Muenster, Huefferstrasse 1, D-48149, Muenster, Germany [2] Department of Bioinformatics, Institute for Computer Science, University of Duesseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany.
Kelly ViningDepartment of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA.
Vindhya AmarasingheDepartment of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA.
Martin RanikDepartment of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA.
Sushma Naithani1] Department of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA [2] Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
Justin ElserDepartment of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA.
Alexander E BoydCenter for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
Aaron Liston1] Department of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA [2] Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
Joseph W Spatafora1] Department of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA [2] Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
Palitha DharmwardhanaDepartment of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA.
Rajani RajaDepartment of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA.
Christopher SullivanCenter for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
Elisson Romanel1] Laboratório de Biologia Evolutiva Teórica e Aplicada, Departamento de Genética, Universidade Federal do Rio de Janeiro (UFRJ), Av. Prof. Rodolpho Paulo Rocco, 21949900 Rio de Janeiro, Brazil [2] Departamento de Biotecnologia, Escola de Engenharia de Lorena-Universidade de São Paulo (EEL-USP), CP116, 12602-810, Lorena-SP, Brazil [3] Laboratório de Genética Molecular Vegetal (LGMV), Departamento de Genética, Universidade Federal do Rio de Janeiro (UFRJ), Av. Prof. Rodolpho Paulo Rocco, 21949900 Rio de Janeiro, Brazil.
Marcio Alves-FerreiraLaboratório de Genética Molecular Vegetal (LGMV), Departamento de Genética, Universidade Federal do Rio de Janeiro (UFRJ), Av. Prof. Rodolpho Paulo Rocco, 21949900 Rio de Janeiro, Brazil.
Carsten KülheimResearch School of Biology, Australian National University, Canberra 0200, Australia.
William FoleyResearch School of Biology, Australian National University, Canberra 0200, Australia.
Victor Carocha1] Laboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France [2] IICT/MNE; Palácio Burnay - Rua da Junqueira, 30, 1349-007 Lisboa, Portugal [3] IBET/ITQB, Av. República, Quinta do Marquês, 2781-901 Oeiras, Portugal.
Jorge Paiva1] IICT/MNE; Palácio Burnay - Rua da Junqueira, 30, 1349-007 Lisboa, Portugal [2] IBET/ITQB, Av. República, Quinta do Marquês, 2781-901 Oeiras, Portugal.
David KudrnaArizona Genomics Institute, University of Arizona, Tucson, Arizona 85721, USA.
Sergio H BrommonschenkelDep. de Fitopatologia, Universidade Federal de Viçosa, Viçosa 36570-000, Brazil.
Giancarlo PasqualiCentro de Biotecnologia, Universidade Federal do Rio Grande do Sul, 91501-970 Porto Alegre, Brazil.
Margaret ByrneScience and Conservation Division, Department of Parks and Wildlife, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983, Australia.
Philippe RigaultGYDLE, 1363 av. Maguire, suite 301, Québec, Quebec G1T 1Z2, Canada.
Josquin TibbitsDepartment of Environment and Primary Industries, Victorian Government, Melbourne, Victoria 3085, Australia.
Antanas SpokeviciusMelbourne School of Land and Environment, University of Melbourne, Melbourne, Victoria 3010, Australia.
Rebecca C JonesSchool of Biological Sciences and National Centre for Future Forest Industries, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia.
Dorothy A Steane1] School of Biological Sciences and National Centre for Future Forest Industries, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia [2] Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Queensland 4558, Australia.
René E VaillancourtSchool of Biological Sciences and National Centre for Future Forest Industries, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia.
Brad M PottsSchool of Biological Sciences and National Centre for Future Forest Industries, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia.
Fourie Joubert1] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Bioinformatics and Computational Biology Unit, Department of Biochemistry, University of Pretoria, Pretoria, Private bag X20, Pretoria 0028, South Africa.
Kerrie BarryUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Georgios J PappasDepartamento de Biologia Celular, Universidade de Brasília, Brasília 70910-900, Brazil.
Steven H StraussDepartment of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA.
Pankaj Jaiswal1] Department of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA [2] Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
Jacqueline Grima-PettenatiLaboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
Jérôme SalseINRA/UBP UMR 1095, 5 Avenue de Beaulieu, 63100 Clermont Ferrand, France.
Yves Van de Peer1] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Department of Plant Biotechnology and Bioinformatics (VIB), Ghent University, Technologiepark 927, B-9000 Ghent, Belgium.
Daniel S RokhsarUS Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
Jeremy Schmutz1] US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA [2] HudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, Alabama 35801, USA.
Oregon State University · USJoint Genome Institute · USUniversity of Pretoria · ZABrazilian Agricultural Research Corporation · BROak Ridge National Laboratory · USUniversity of Tasmania · AUGhent University · BEHudsonAlpha Institute for Biotechnology · USLaboratoire de Recherche en Sciences Végétales · FRUniversité Toulouse III - Paul Sabatier · FRAustralian National University · AUInstitute for Biodiversity · DEUniversidade Federal do Rio de Janeiro · BRCentre National de la Recherche Scientifique · FRGovernment of Victoria · AUInternational Institute of Computer Technologies · RUParks and Wildlife Service · AUThe University of Melbourne · AUUniversidade de Brasília · BRUniversidade Federal de Viçosa · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eucalypts are the world's most widely planted hardwood trees. Their outstanding diversity, adaptability and growth have made them a global renewable resource of fibre and energy. We sequenced and assembled >94% of the 640-megabase genome of Eucalyptus grandis. Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest proportion thus far in plant genomes. Eucalyptus also shows the highest diversity of genes for specialized metabolites such as terpenes that act as chemical defence and provide unique pharmaceutical oils. Genome sequencing of the E. grandis sister species E. globulus and a set of inbred E. grandis tree genomes reveals dynamic genome evolution and hotspots of inbreeding depression. The E. grandis genome is the first reference for the eudicot order Myrtales and is placed here sister to the eurosids. This resource expands our understanding of the unique biology of large woody perennials and provides a powerful tool to accelerate comparative biology, breeding and biotechnology.

Indexed as

Genome, PlantEucalyptusEvolution, MolecularGenetic VariationInbreedingPhylogeny

Identifiers

PMID24919147
OpenAlexW2036016254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.