Evidence map›Paper›PMID 24919117›Full record

ArticlePloS one2014

Human retinal transmitochondrial cybrids with J or H mtDNA haplogroups respond differently to ultraviolet radiation: implications for retinal diseases.

Deepika Malik, Tiffany Hsu, Payam Falatoonzadeh, Javier Cáceres-del-Carpio, Mohamed Tarek, Marilyn Chwa, Shari R Atilano, Claudio Ramirez, Anthony B Nesburn, David S Boyer and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  13. BCL2L13: physiological and pathological meanings.Cellular and molecular life sciences : CMLS · 2021
    Review
  14. Mitochondria: The Retina's Achilles' Heel in AMD.Advances in experimental medicine and biology · 2021
    Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Deepika MalikGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
Tiffany HsuGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
Payam FalatoonzadehGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
Javier Cáceres-del-CarpioGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
Mohamed TarekGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America; Department of Ophthalmology, El-Minya University, El-Minya, Egypt.
Marilyn ChwaGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
Shari R AtilanoGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
Claudio RamirezGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
Anthony B NesburnGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America; Cedars-Sinai Medical Center, Los Angeles, California, United States of America.
David S BoyerRetina-Vitreous Associates Medical Group; Beverly Hills, California, United States of America.
Baruch D KuppermannGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
S Michal JazwinskiTulane Center for Aging, Tulane University, New Orleans, Louisiana, United States of America.
Michael V MiceliTulane Center for Aging, Tulane University, New Orleans, Louisiana, United States of America.
Douglas C WallaceCenter for Mitochondrial and Epigenomic Medicine, Children's Hospital of Philadelphia and Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Nitin UdarGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America.
M Cristina KenneyGavin Herbert Eye Institute, University California Irvine, Irvine, California, United States of America; Department of Pathology and Laboratory Medicine, University California Irvine, Irvine, California, United States of America.
University of California, Irvine · USTulane University · USBeverly Hills Cancer Center · USCedars-Sinai Medical Center · USChildren's Hospital of Philadelphia · US

Funding

CELLULAR AGING IN A YEAST MODEL SYSTEMR37AG006168 · NIA · TULANE UNIVERSITY OF LOUISIANA · PI JAZWINSKI, S MICHAL · 1994 to 2016
$5.0M
CELLULAR AGING IN A YEAST MODEL SYSTEMR01AG006168 · NIA · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI JAZWINSKI, S MICHAL · 1986 to 1994
–
NIA NIH HHS AG006168NIA NIH HHS R37 AG006168
6 · The paper itself

Abstract

backgroundIt has been recognized that cells do not respond equally to ultraviolet (UV) radiation but it is not clear whether this is due to genetic, biochemical or structural differences of the cells. We have a novel cybrid (cytoplasmic hybrids) model that allows us to analyze the contribution of mitochondrial DNA (mtDNA) to cellular response after exposure to sub-lethal dose of UV. mtDNA can be classified into haplogroups as defined by accumulations of specific single nucleotide polymorphisms (SNPs). Recent studies have shown that J haplogroup is high risk for age-related macular degeneration while the H haplogroup is protective. This study investigates gene expression responses in J cybrids versus H cybrids after exposure to sub-lethal doses of UV-radiation. METHODOLOGY/PRINCIPAL

findingsCybrids were created by fusing platelets isolated from subjects with either H (n = 3) or J (n = 3) haplogroups with mitochondria-free (Rho0) ARPE-19 cells. The H and J cybrids were cultured for 24 hours, treated with 10 mJ of UV-radiation and cultured for an additional 120 hours. Untreated and treated cybrids were analyzed for growth rates and gene expression profiles. The UV-treated and untreated J cybrids had higher growth rates compared to H cybrids. Before treatment, J cybrids showed lower expression levels for CFH, CD55, IL-33, TGF-A, EFEMP-1, RARA, BCL2L13 and BBC3. At 120 hours after UV-treatment, the J cybrids had decreased CFH, RARA and BBC3 levels but increased CD55, IL-33 and EFEMP-1 compared to UV-treated H cybrids. CONCLUSION/SIGNIFICANCE: In cells with identical nuclei, the cellular response to sub-lethal UV-radiation is mediated in part by the mtDNA haplogroup. This supports the hypothesis that differences in growth rates and expression levels of complement, inflammation and apoptosis genes may result from population-specific, hereditary SNP variations in mtDNA. Therefore, when analyzing UV-induced damage in tissues, the mtDNA haplogroup background may be important to consider.

Indexed as

Polymorphism, Single NucleotideCells, CulturedDNA, MitochondrialGene Expression RegulationHumansMacular DegenerationMitochondriaRetinaUltraviolet RaysDNA, Mitochondrial

Identifiers

PMID24919117
PMCPMC4053329
OpenAlexW2072082955

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.