Evidence map›Paper›PMID 24916504›Full record

ArticleBMC genomics2014

Dramatic expansion of the black widow toxin arsenal uncovered by multi-tissue transcriptomics and venom proteomics.

Robert A Haney, Nadia A Ayoub, Thomas H Clarke, Cheryl Y Hayashi, Jessica E Garb

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. De Novo Transcriptome Analysis of the Venom ofMolecules (Basel, Switzerland) · 2021
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  9. Widow spiders in the New World: a review onThe journal of venomous animals and toxins including tropical diseases · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Homeobox Gene Duplication and Divergence in Arachnids.Molecular biology and evolution · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Robert A Haney
Nadia A Ayoub
Thomas H Clarke
Cheryl Y Hayashi
Jessica E GarbDepartment of Biological Sciences, University of Massachusetts, Lowell, MA 01854, USA. Jessica_Garb@uml.edu.
University of Massachusetts Lowell · USWashington and Lee University · USUniversity of California, Riverside · US

Funding

Discovering Biomedically Significant Spider Venom Toxins with GenomicsR15GM097714 · NIGMS · UNIVERSITY OF MASSACHUSETTS LOWELL · PI GARB, JESSICA ELLEN · 2011 to 2015
$611k
Molecular evolution of latrotoxins: neurotoxins from black widow spider venomF32GM083661 · NIGMS · UNIVERSITY OF ARIZONA · PI GARB, JESSICA · 2007 to 2009
$91k
Convergent Molecular Evolution of Moth and Spider SilksF32GM078875 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI AYOUB, NADIA A · 2007 to 2009
$85k
NIGMS NIH HHS 1F32GM083661-01NIGMS NIH HHS 1R15GM097714-01NIGMS NIH HHS F32 GM078875NIGMS NIH HHS F32 GM083661NIGMS NIH HHS F32 GM78875-1ANIGMS NIH HHS R15 GM097714
6 · The paper itself

Abstract

backgroundAnimal venoms attract enormous interest given their potential for pharmacological discovery and understanding the evolution of natural chemistries. Next-generation transcriptomics and proteomics provide unparalleled, but underexploited, capabilities for venom characterization. We combined multi-tissue RNA-Seq with mass spectrometry and bioinformatic analyses to determine venom gland specific transcripts and venom proteins from the Western black widow spider (Latrodectus hesperus) and investigated their evolution.

resultsWe estimated expression of 97,217 L. hesperus transcripts in venom glands relative to silk and cephalothorax tissues. We identified 695 venom gland specific transcripts (VSTs), many of which BLAST and GO term analyses indicate may function as toxins or their delivery agents. ~38% of VSTs had BLAST hits, including latrotoxins, inhibitor cystine knot toxins, CRISPs, hyaluronidases, chitinase, and proteases, and 59% of VSTs had predicted protein domains. Latrotoxins are venom toxins that cause massive neurotransmitter release from vertebrate or invertebrate neurons. We discovered ≥ 20 divergent latrotoxin paralogs expressed in L. hesperus venom glands, significantly increasing this biomedically important family. Mass spectrometry of L. hesperus venom identified 49 proteins from VSTs, 24 of which BLAST to toxins. Phylogenetic analyses showed venom gland specific gene family expansions and shifts in tissue expression.

conclusionsQuantitative expression analyses comparing multiple tissues are necessary to identify venom gland specific transcripts. We present a black widow venom specific exome that uncovers a trove of diverse toxins and associated proteins, suggesting a dynamic evolutionary history. This justifies a reevaluation of the functional activities of black widow venom in light of its emerging complexity.

Indexed as

AnimalsArthropod ProteinsBlack Widow SpiderGenomicsMass SpectrometryMolecular Sequence DataPhylogenyProteomeSequence Analysis, RNASilkSpider VenomsTranscriptomeArthropod ProteinsProteomeSilkSpider Venoms

Identifiers

PMID24916504
PMCPMC4058007
OpenAlexW1983237645

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.