Evidence map›Paper›PMID 24916159›Full record

ArticleeLife2014

Mechanisms of organelle biogenesis govern stochastic fluctuations in organelle abundance.

Shankar Mukherji, Erin K O'Shea

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 67 citations in OpenAlex.

  1. Organelle partitioning in the multi-budding yeastbioRxiv : the preprint server for biology · 2026
    Article
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  3. Review
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  15. Article
  16. Scaling of Subcellular Structures.Annual review of cell and developmental biology · 2020
    Review
  17. Organelle size scaling over embryonic development.Wiley interdisciplinary reviews. Developmental biology · 2020
    Review
  18. Article
  19. Article
  20. Evolving mtDNA populations within cells.Biochemical Society transactions · 2019
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Shankar MukherjiFAS Center for Systems Biology, Harvard University, Cambridge, United States Department of Molecular and Cellular Biology, Harvard University, Cambridge, United States Howard Hughes Medical Institute, Harvard University, Cambridge, United States.
Erin K O'SheaFAS Center for Systems Biology, Harvard University, Cambridge, United States Department of Molecular and Cellular Biology, Harvard University, Cambridge, United States Howard Hughes Medical Institute, Harvard University, Cambridge, United States Department of Chemistry and Chemical Biology, Harvard University, Cambridge, United States Erin_Oshea@harvard.edu.
Center for Systems Biology · US

Funding

Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Regulation of organelle function by spatiotemporal control of gene expressionF32GM101751 · NIGMS · HARVARD UNIVERSITY · PI MUKHERJI, ARINDAM SHANKAR · 2013 to 2013
$52k
NHGRI NIH HHS T32 HG002295NIGMS NIH HHS F32 GM101751NIGMS NIH HHS F32GM101751
6 · The paper itself

Abstract

Fluctuations in organelle abundance can profoundly limit the precision of cell biological processes from secretion to metabolism. We modeled the dynamics of organelle biogenesis and predicted that organelle abundance fluctuations depend strongly on the specific mechanisms that increase or decrease the number of a given organelle. Our model exactly predicts the size of experimentally measured Golgi apparatus and vacuole abundance fluctuations, suggesting that cells tolerate the maximum level of variability generated by the Golgi and vacuole biogenesis pathways. We observe large increases in peroxisome abundance fluctuations when cells are transferred from glucose-rich to fatty acid-rich environments. These increased fluctuations are significantly diminished in mutants lacking peroxisome fission factors, leading us to infer that peroxisome biogenesis switches from de novo synthesis to primarily fission. Our work provides a general framework for exploring stochastic organelle biogenesis and using fluctuations to quantitatively unravel the biophysical pathways that control the abundance of subcellular structures.DOI: http://dx.doi.org/10.7554/eLife.02678.001.

Indexed as

Organelle BiogenesisAlcohol DehydrogenaseBiophysicsCulture MediaFatty AcidsFungal ProteinsGenetic LociGlucoseGolgi ApparatusGreen Fluorescent ProteinsHydro-LyasesImage Processing, Computer-AssistedLuminescent ProteinsModels, TheoreticalOrganellesPeptide Elongation Factor 1ADH1 protein, S cerevisiaeAlcohol DehydrogenaseCulture MediaFatty AcidsFungal ProteinsGlucoseGreen Fluorescent ProteinsHIS3 protein, S cerevisiaeHydro-LyasesLuminescent ProteinsPeptide Elongation Factor 1Peptide Elongation FactorsRed Fluorescent ProteinSaccharomyces cerevisiae ProteinsTEF2 protein, S cerevisiaecell biologyfluctuationsmathematical modelingorganellessystems biology

Identifiers

PMID24916159
PMCPMC4046565
OpenAlexW2114074952

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.