ArticleFunctional & integrative genomics2014
C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses.
Article in Functional & integrative genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
57 citing papers in PubMed, 155 citations in OpenAlex.
- Genome-Wide Identification and Characterization of the C2H2 Zinc Finger Gene Family in Pear (Biology · 2026Article
- Genome-wide identification of the WIP family in foxtail millet (Setaria italica) and functional analysis of SiWIP3 in inhibiting growth in transgenic Arabidopsis thaliana.BMC genomics · 2025Article
- GHMP gene family: identification, evolutionary and expression analysis under various exogenous hormones and abiotic stress in tomato.BMC plant biology · 2025Article
- Genome-Wide Identification and Functional Analysis ofInternational journal of molecular sciences · 2025Article
- Transcriptomic Identification of Potential C2H2 Zinc Finger Protein Transcription Factors inInternational journal of molecular sciences · 2024Article
- Review
- Genome-Wide Analysis of Q-Type C2H2 ZFP Genes in Response to Biotic and Abiotic Stresses in Sugar Beet.Biology · 2023Article
- Climate and Soil Microsite Conditions Determine Local Adaptation in Declining Silver Fir Forests.Plants (Basel, Switzerland) · 2023Article
- Identification of C2H2 zinc finger genes through genome-wide association study and functional analyses of LkZFPs in response to stresses in Larix kaempferi.BMC plant biology · 2023Article
- Modulation of the Berry Skin Transcriptome of cv. Tempranillo Induced by Water Stress Levels.Plants (Basel, Switzerland) · 2023Article
- Analysis of the C2H2 Gene Family in Maize (Life (Basel, Switzerland) · 2022Article
- Genome-Wide Analysis of C2H2 Zinc Finger Gene Family and Its Response to Cold and Drought Stress in Sorghum [International journal of molecular sciences · 2022Article
- Developmental Regulation of Transcription in Touriga Nacional Berries under Deficit Irrigation.Plants (Basel, Switzerland) · 2022Article
- Genome-wide characterization of C2H2 zinc-finger gene family provides insight into the mechanisms and evolution of the dehydration-rehydration responses inFrontiers in plant science · 2022Article
- Multi-omics intervention inFrontiers in plant science · 2022Review
- Comprehensive genomic survey, structural classification and expression analysis of CBMC plant biology · 2021Article
- Genome-wide identification of PTI1 family in Setaria italica and salinity-responsive functional analysis of SiPTI1-5.BMC plant biology · 2021Article
- De novo transcriptome analysis of white teak (Gmelina arborea Roxb) wood reveals critical genes involved in xylem development and secondary metabolism.BMC genomics · 2021Article
- Plant Transcription Factors Involved in Drought and Associated Stresses.International journal of molecular sciences · 2021Review
- Genome wide identification and expression analysis of pepper C3 Biotech · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
C2H2 type of zinc finger transcription factors (TFs) play crucial roles in plant stress response and hormone signal transduction. Hence considering its importance, genome-wide investigation and characterization of C2H2 zinc finger proteins were performed in Arabidopsis, rice and poplar but no such study was conducted in foxtail millet which is a C4 Panicoid model crop well known for its abiotic stress tolerance. The present study identified 124 C2H2-type zinc finger TFs in foxtail millet (SiC2H2) and physically mapped them onto the genome. The gene duplication analysis revealed that SiC2H2s primarily expanded in the genome through tandem duplication. The phylogenetic tree classified these TFs into five groups (I-V). Further, miRNAs targeting SiC2H2 transcripts in foxtail millet were identified. Heat map demonstrated differential and tissue-specific expression patterns of these SiC2H2 genes. Comparative physical mapping between foxtail millet SiC2H2 genes and its orthologs of sorghum, maize and rice revealed the evolutionary relationships of C2H2 type of zinc finger TFs. The duplication and divergence data provided novel insight into the evolutionary aspects of these TFs in foxtail millet and related grass species. Expression profiling of candidate SiC2H2 genes in response to salinity, dehydration and cold stress showed differential expression pattern of these genes at different time points of stresses.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.