Evidence map›Paper›PMID 24915100›Full record

ArticleActa crystallographica. Section F, Structural biology communications2014

Preliminary joint X-ray and neutron protein crystallographic studies of ecDHFR complexed with folate and NADP+.

Qun Wan, Andrey Y Kovalevsky, Mark A Wilson, Brad C Bennett, Paul Langan, Chris Dealwis

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. The rise of neutron cryo-crystallography.Acta crystallographica. Section D, Structural biology · 2018
    Review
  5. Toward resolving the catalytic mechanism of dihydrofolate reductase using neutron and ultrahigh-resolution X-ray crystallography.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Qun WanDepartment of Biochemistry, College of Medicine, Yangzhou University, 11 HuaiHai Road, Yangzhou 225001, People's Republic of China.
Andrey Y KovalevskyBiology and Soft Matter Division, Oak Ridge National Laboratory, PO Box 2008, Oak Ridge, TN 37831, USA.
Mark A WilsonDepartment of Biochemistry/Redox Biology Center, University of Nebraska, 1901 Vine Street, Lincoln, NE 68588, USA.
Brad C BennettDepartment of Molecular Physiology and Biological Physics, University of Virginia, PO Box 800793, Charlottesville, VA 22908, USA.
Paul LanganBiology and Soft Matter Division, Oak Ridge National Laboratory, PO Box 2008, Oak Ridge, TN 37831, USA.
Chris DealwisDepartment of Pharmacology, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.

Funding

Computational Tools for Neutron Protein CrystallographyR01GM071939 · NIGMS · UT-BATTELLE, LLC-OAK RIDGE NATIONAL LAB · PI COATES, LEIGHTON · 2004 to 2019
$4.3M
Redox Regulation of DJ-1 FunctionR01GM092999 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI WILSON, MARK A. · 2010 to 2014
$1.3M
NIGMS NIH HHS R01 GM071939NIGMS NIH HHS R01GM071939NIGMS NIH HHS R01 GM092999NIGMS NIH HHS R01GM092999
6 · The paper itself

Abstract

A crystal of Escherichia coli dihydrofolate reductase (ecDHFR) complexed with folate and NADP+ of 4×1.3×0.7 mm (3.6 mm3) in size was obtained by sequential application of microseeding and macroseeding. A neutron diffraction data set was collected to 2.0 Å resolution using the IMAGINE diffractometer at the High Flux Isotope Reactor within Oak Ridge National Laboratory. A 1.6 Å resolution X-ray data set was also collected from a smaller crystal at room temperature. The neutron and X-ray data were used together for joint refinement of the ecDHFR-folate-NADP+ ternary-complex structure in order to examine the protonation state, protein dynamics and solvent structure of the complex, furthering understanding of the catalytic mechanism.

Indexed as

CrystallographyFolic AcidNADPNeutronsTetrahydrofolate DehydrogenaseX-RaysFolic AcidNADPTetrahydrofolate Dehydrogenasedihydrofolate reductaseEscherichia coliprotonation state

Identifiers

PMID24915100
PMCPMC4051544

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.