Evidence map›Paper›PMID 24914326›Full record

ReviewWorld journal of gastroenterology2014

Reduced genome size of Helicobacter pylori originating from East Asia.

Quan-Jiang Dong, Li-Li Wang, Zi-Bing Tian, Xin-Jun Yu, Sheng-Jiao Jia, Shi-Ying Xuan

Abstract readReview
In one paragraph

Review in World journal of gastroenterology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Integrative and Conjugative Elements ofFrontiers in cellular and infection microbiology · 2020
    Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Quan-Jiang DongQuan-Jiang Dong, Li-Li Wang, Zi-Bing Tian, Xin-Jun Yu, Sheng-Jiao Jia, Shi-Ying Xuan, Central Laboratories and Department of Gastroenterology, Qingdao Municipal Hospital, Qingdao 266000, Shandong Province, China.
Li-Li WangQuan-Jiang Dong, Li-Li Wang, Zi-Bing Tian, Xin-Jun Yu, Sheng-Jiao Jia, Shi-Ying Xuan, Central Laboratories and Department of Gastroenterology, Qingdao Municipal Hospital, Qingdao 266000, Shandong Province, China.
Zi-Bing TianQuan-Jiang Dong, Li-Li Wang, Zi-Bing Tian, Xin-Jun Yu, Sheng-Jiao Jia, Shi-Ying Xuan, Central Laboratories and Department of Gastroenterology, Qingdao Municipal Hospital, Qingdao 266000, Shandong Province, China.
Xin-Jun YuQuan-Jiang Dong, Li-Li Wang, Zi-Bing Tian, Xin-Jun Yu, Sheng-Jiao Jia, Shi-Ying Xuan, Central Laboratories and Department of Gastroenterology, Qingdao Municipal Hospital, Qingdao 266000, Shandong Province, China.
Sheng-Jiao JiaQuan-Jiang Dong, Li-Li Wang, Zi-Bing Tian, Xin-Jun Yu, Sheng-Jiao Jia, Shi-Ying Xuan, Central Laboratories and Department of Gastroenterology, Qingdao Municipal Hospital, Qingdao 266000, Shandong Province, China.
Shi-Ying XuanQuan-Jiang Dong, Li-Li Wang, Zi-Bing Tian, Xin-Jun Yu, Sheng-Jiao Jia, Shi-Ying Xuan, Central Laboratories and Department of Gastroenterology, Qingdao Municipal Hospital, Qingdao 266000, Shandong Province, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Helicobacter pylori (H. pylori), a major pathogen colonizing the human stomach, shows great genetic variation. Comparative analysis of strains from different H. pylori populations revealed that the genome size of strains from East Asia decreased to 1.60 Mbp, which is significantly smaller than that from Europe or Africa. In parallel with the genome reduction, the number of protein coding genes was decreased, and the guanine-cytosine content was lowered to 38.9%. Elimination of non-essential genes by mutations is likely to be a major cause of the genome reduction. Bacteria with a small genome cost less energy. Thus, H. pylori strains from East Asia may have proliferation and growth advantages over those from Western countries. This could result in enhanced capacity of bacterial spreading. Therefore, the reduced genome size potentially contributes to the high prevalence of H. pylori in East Asia.

Indexed as

Genome, BacterialGenome SizeAsiaGenetic VariationHelicobacter InfectionsHelicobacter pyloriHumansMutationPhylogenyPrevalenceRecombination, GeneticStomachEpidemiologyGenomeHelicobacter pyloriMutationRecombination

Identifiers

PMID24914326
PMCPMC4024775

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.