Evidence map›Paper›PMID 24914238›Full record

ArticleThe Journal of cell biology2014

Regulation of cargo recognition, commitment, and unloading drives cotranslational protein targeting.

Ishu Saraogi, David Akopian, Shu-Ou Shan

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Spatiotemporal kinetics of the SRP pathway in liveProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Cotranslational Biogenesis of Membrane Proteins in Bacteria.Frontiers in molecular biosciences · 2022
    Review
  7. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Protein export through the bacterial Sec pathway.Nature reviews. Microbiology · 2017
    Review
  16. Review
  17. Article
  18. Article
  19. Multiply labeling proteins for studies of folding and stability.Current opinion in chemical biology · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ishu SaraogiDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125 sshan@caltech.edu ishu@iiserb.ac.in.
David AkopianDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125.
Shu-Ou ShanDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125 sshan@caltech.edu ishu@iiserb.ac.in.
California Institute of Technology · US

Funding

Molecular Mechanism of Protein Targeting by the Signal Recognition ParticleR01GM078024 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI SHAN, SHU-OU · 2007 to 2020
$4.4M
NIGMS NIH HHS GM078024NIGMS NIH HHS R01 GM078024
6 · The paper itself

Abstract

Efficient and accurate protein localization is essential to cells and requires protein-targeting machineries to both effectively capture the cargo in the cytosol and productively unload the cargo at the membrane. To understand how these challenges are met, we followed the interaction of translating ribosomes during their targeting by the signal recognition particle (SRP) using a site-specific fluorescent probe in the nascent protein. We show that initial recruitment of SRP receptor (SR) selectively enhances the affinity of SRP for correct cargos, thus committing SRP-dependent substrates to the pathway. Real-time measurement of cargo transfer from the targeting to translocation machinery revealed multiple factors that drive this event, including GTPase rearrangement in the SRP-SR complex, stepwise displacement of SRP from the ribosome and signal sequence by SecYEG, and elongation of the nascent polypeptide. Our results elucidate how active and sequential regulation of the SRP-cargo interaction drives efficient and faithful protein targeting.

Indexed as

Gene Expression RegulationProtein TransportBacterial ProteinsCrystallizationCytosolEscherichia coliEscherichia coli ProteinsFluorescence Resonance Energy TransferFluorescent DyesGTP PhosphohydrolasesPeptidesProtein BiosynthesisProtein Sorting SignalsProtein Structure, TertiaryReceptors, Cytoplasmic and NuclearReceptors, PeptideBacterial ProteinsEscherichia coli ProteinsFluorescent DyesFtsY protein, BacteriaGTP PhosphohydrolasesPeptidesProtein Sorting SignalsReceptors, Cytoplasmic and NuclearReceptors, Peptidesignal peptide receptorSignal Recognition Particle

Identifiers

PMID24914238
PMCPMC4050729
OpenAlexW2153242873

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.