Evidence map›Paper›PMID 24913629›Full record

ArticleJournal of experimental botany2014

Barley has two peroxisomal ABC transporters with multiple functions in β-oxidation.

Guillermina M Mendiondo, Anne Medhurst, Carlo W van Roermund, Xuebin Zhang, Jean Devonshire, Duncan Scholefield, José Fernández, Barry Axcell, Luke Ramsay, Hans R Waterham and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 43 citations in OpenAlex.

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  13. Peroxisomal ABC transporters: functions and mechanism.Biochemical Society transactions · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Guillermina M MendiondoDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
Anne MedhurstDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
Carlo W van RoermundLaboratory of Genetic Metabolic Diseases, Academic Medical Centre, University of Amsterdam, 1105 AZ, Amsterdam, The Netherlands.
Xuebin ZhangBiological Chemistry and Crop Protection Department, Rothamsted Research, Harpenden AL5 2JQ, UK.
Jean DevonshirePlant Biology and Crop Science Department, Rothamsted Research, Harpenden AL5 2JQ, UK.
Duncan ScholefieldDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
José FernándezDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
Barry AxcellSABMiller plc., SABMiller House, Church Street, West Woking, Surrey GU21 6HS, UK.
Luke RamsayDivision of Plant Sciences, College of life Sciences, University of Dundee and The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
Hans R WaterhamLaboratory of Genetic Metabolic Diseases, Academic Medical Centre, University of Amsterdam, 1105 AZ, Amsterdam, The Netherlands.
Robbie WaughDivision of Plant Sciences, College of life Sciences, University of Dundee and The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
Frederica L TheodoulouBiological Chemistry and Crop Protection Department, Rothamsted Research, Harpenden AL5 2JQ, UK freddie.theodoulou@rothamsted.ac.uk michael.holdsworth@nottingham.ac.uk.
Michael J HoldsworthDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK freddie.theodoulou@rothamsted.ac.uk michael.holdsworth@nottingham.ac.uk.
University of Nottingham · GBRothamsted Research · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C518481/1Biotechnology and Biological Sciences Research Council BB/F006934/1Biotechnology and Biological Sciences Research Council BB/F007108/1
6 · The paper itself

Abstract

In oilseed plants, peroxisomal β-oxidation functions not only in lipid catabolism but also in jasmonate biosynthesis and metabolism of pro-auxins. Subfamily D ATP-binding cassette (ABC) transporters mediate import of β-oxidation substrates into the peroxisome, and the Arabidopsis ABCD protein, COMATOSE (CTS), is essential for this function. Here, the roles of peroxisomal ABCD transporters were investigated in barley, where the main storage compound is starch. Barley has two CTS homologues, designated HvABCD1 and HvABCD2, which are widely expressed and present in embryo and aleurone tissues during germination. Suppression of both genes in barley RNA interference (RNAi) lines indicated roles in metabolism of 2,4-dichlorophenoxybutyrate (2,4-DB) and indole butyric acid (IBA), jasmonate biosynthesis, and determination of grain size. Transformation of the Arabidopsis cts-1 null mutant with HvABCD1 and HvABCD2 confirmed these findings. HvABCD2 partially or completely complemented all tested phenotypes of cts-1. In contrast, HvABCD1 failed to complement the germination and establishment phenotypes of cts-1 but increased the sensitivity of hypocotyls to 100 μM IBA and partially complemented the seed size phenotype. HvABCD1 also partially complemented the yeast pxa1/pxa2Δ mutant for fatty acid β-oxidation. It is concluded that the core biochemical functions of peroxisomal ABC transporters are largely conserved between oilseeds and cereals but that their physiological roles and importance may differ.

Indexed as

ArabidopsisArabidopsis ProteinsATP-Binding Cassette TransportersHordeumOrganisms, Genetically ModifiedOxidation-ReductionPeroxisomesPlants, Genetically ModifiedRNA InterferenceSaccharomyces cerevisiaeArabidopsis ProteinsATP-Binding Cassette TransportersAleuronegene duplicationgerminationindole butyric acidoil bodyseed size.

Identifiers

PMID24913629
PMCPMC4144768
OpenAlexW2156938140

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.