Evidence map›Paper›PMID 24913627›Full record

ArticleJournal of experimental botany2014

Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism.

Katia Silvera, Klaus Winter, B Leticia Rodriguez, Rebecca L Albion, John C Cushman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Identification and Analysis ofInternational journal of molecular sciences · 2024
    Article
  3. The CAM lineages of planet Earth.Annals of botany · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. The genome sequence ofiScience · 2021
    Article
  8. Exploring CScientific reports · 2020
    Article
  9. Exploring molecular evolution of Rubisco in CBMC evolutionary biology · 2020
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Phosphorylation of PhosphoThe Plant cell · 2017
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Katia SilveraSmithsonian Tropical Research Institute, PO Box 0843-03092, Balboa, Ancon, Republic of Panama Department of Biochemistry & Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330, USA katias@ucr.edu.
Klaus WinterSmithsonian Tropical Research Institute, PO Box 0843-03092, Balboa, Ancon, Republic of Panama.
B Leticia RodriguezDepartment of Biochemistry & Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330, USA.
Rebecca L AlbionDepartment of Biochemistry & Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330, USA.
John C CushmanDepartment of Biochemistry & Molecular Biology, MS330, University of Nevada, Reno, NV 89557-0330, USA.
University of Nevada, Reno · USSmithsonian Tropical Research Institute · PA

Funding

UNDERGRADUATE RESEARCH AND TRAININGP20RR016464 · NCRR · UNIVERSITY OF NEVADA RENO · PI LORICO, AURELIO · 2001 to 2011
$30.3M
NCRR NIH HHS P20 RR-016464NCRR NIH HHS P20 RR016464
6 · The paper itself

Abstract

Phosphoenolpyruvate carboxylase (PEPC) catalyses the initial fixation of atmospheric CO2 into oxaloacetate and subsequently malate. Nocturnal accumulation of malic acid within the vacuole of photosynthetic cells is a typical feature of plants that perform crassulacean acid metabolism (CAM). PEPC is a ubiquitous plant enzyme encoded by a small gene family, and each member encodes an isoform with specialized function. CAM-specific PEPC isoforms probably evolved from ancestral non-photosynthetic isoforms by gene duplication events and subsequent acquisition of transcriptional control elements that mediate increased leaf-specific or photosynthetic-tissue-specific mRNA expression. To understand the patterns of functional diversification related to the expression of CAM, ppc gene families and photosynthetic patterns were characterized in 11 closely related orchid species from the subtribe Oncidiinae with a range of photosynthetic pathways from C3 photosynthesis (Oncidium cheirophorum, Oncidium maduroi, Rossioglossum krameri, and Oncidium sotoanum) to weak CAM (Oncidium panamense, Oncidium sphacelatum, Gomesa flexuosa and Rossioglossum insleayi) and strong CAM (Rossioglossum ampliatum, Trichocentrum nanum, and Trichocentrum carthagenense). Phylogenetic analysis revealed the existence of two main ppc lineages in flowering plants, two main ppc lineages within the eudicots, and three ppc lineages within the Orchidaceae. Our results indicate that ppc gene family expansion within the Orchidaceae is likely to be the result of gene duplication events followed by adaptive sequence divergence. CAM-associated PEPC isoforms in the Orchidaceae probably evolved from several independent origins.

Indexed as

PhotosynthesisBiological EvolutionCarbon DioxideGene DuplicationOrchidaceaePhosphoenolpyruvate CarboxylasePhylogenyPlant LeavesPlant ProteinsPlant TranspirationProtein IsoformsCarbon DioxidePhosphoenolpyruvate CarboxylasePlant ProteinsProtein IsoformsCrassulacean acid metabolismgene duplicationOncidiinaeOrchidaceaephosphoenolpyruvate carboxylasephotosynthesis.

Identifiers

PMID24913627
PMCPMC4085970
OpenAlexW2149956474

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.