Evidence map›Paper›PMID 24912454›Full record

ArticleMicrobiologyOpen2014

Colony morphology and transcriptome profiling of Pseudomonas putida KT2440 and its mutants deficient in alginate or all EPS synthesis under controlled matric potentials.

Gamze Gulez, Ali Altıntaş, Mustafa Fazli, Arnaud Dechesne, Christopher T Workman, Tim Tolker-Nielsen, Barth F Smets

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Draft genome sequencing of multidrug-resistantMicrobiology resource announcements · 2024
    Article
  3. Draft genome sequencing of multidrug-resistantMicrobiology resource announcements · 2024
    Article
  4. Article
  5. ACS synthetic biology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. LeveragingFrontiers in microbiology · 2021
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Gamze GulezDepartment of Environmental Engineering, Technical University of Denmark, Building 113, Kongens Lyngby, Denmark.
Ali Altıntaş
Mustafa Fazli
Arnaud Dechesne
Christopher T Workman
Tim Tolker-Nielsen
Barth F Smets

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas putida is a versatile bacterial species adapted to soil and its fluctuations. Like many other species living in soil, P. putida often faces water limitation. Alginate, an exopolysaccharide (EPS) produced by P. putida, is known to create hydrated environments and alleviate the effect of water limitation. In addition to alginate, P. putida is capable of producing cellulose (bcs), putida exopolysaccharide a (pea), and putida exopolysaccharide b (peb). However, unlike alginate, not much is known about their roles under water limitation. Hence, in this study we examined the role of different EPS components under mild water limitation. To create environmentally realistic water limited conditions as observed in soil, we used the Pressurized Porous Surface Model. Our main hypothesis was that under water limitation and in the absence of alginate other exopolysaccharides would be more active to maintain homeostasis. To test our hypothesis, we investigated colony morphologies and whole genome transcriptomes of P. putida KT2440 wild type and its mutants deficient in synthesis of either alginate or all known EPS. Overall our results support that alginate is an important exopolysaccharide under water limitation and in the absence of alginate other tolerance mechanisms are activated.

Indexed as

Gene Expression ProfilingAlginatesDehydrationGlucuronic AcidHexuronic AcidsPolysaccharides, BacterialPseudomonas putidaStress, PhysiologicalWaterAlginatesGlucuronic AcidHexuronic AcidsPolysaccharides, BacterialWaterBioinformaticsenvironmental stressmicrobial ecologyPseudomonas

Identifiers

PMID24912454
PMCPMC4287175

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.