Evidence map›Paper›PMID 24909838›Full record

ArticleBMC genomics2014

The transcriptome of lae1 mutants of Trichoderma reesei cultivated at constant growth rates reveals new targets of LAE1 function.

Erzsébet Fekete, Levente Karaffa, Razieh Karimi Aghcheh, Zoltán Németh, Eva Fekete, Anita Orosz, Melinda Paholcsek, Anikó Stágel, Christian P Kubicek

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Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. The Impact of DNA Methylation inMicroorganisms · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. The Putative MethyltransferaseFrontiers in microbiology · 2020
    Article
  8. Article
  9. Carbon Catabolite Repression in Filamentous Fungi.International journal of molecular sciences · 2017
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. The Different Roles ofFrontiers in microbiology · 2016
    Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Erzsébet Fekete
Levente KaraffaDepartment of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary. karaffa.levente@science.unideb.hu.
Razieh Karimi Aghcheh
Zoltán Németh
Eva Fekete
Anita Orosz
Melinda Paholcsek
Anikó Stágel
Christian P Kubicek

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe putative methyltransferase LaeA is a global regulator that affects the expression of multiple secondary metabolite gene clusters in several fungi. In Trichoderma reesei, its ortholog LAE1 appears to predominantly regulate genes involved in increasing competitive fitness in its environment, including expression of cellulases and polysaccharide hydrolases. A drawback in all studies related to LaeA/LAE1 function so far, however, is that the respective loss-of-function and overexpressing mutants display different growth rates. Thus some of the properties attributed to LaeA/LAE1 could be simply due to changes of the growth rate.

resultsWe cultivated T. reesei, a Δlae1 mutant and a lae1-overexpressing strain in chemostats on glucose at two different growth rates (0.075 and 0.020 h-1) which resemble growth rates at repressing and derepressing conditions, respectively. Under these conditions, the effect of modulating LAE1 expression was mainly visible in the Δlae1 mutant, whereas the overexpressing strain showed little differences to the parent strain. The effect on the expression of some gene categories identified earlier (polyketide synthases, heterokaryon incompatibility proteins, PTH11-receptors) was confirmed, but in addition GCN5-N-acetyltransferases, amino acid permeases and flavin monooxygenases were identified as so far unknown major targets of LAE1 action. LAE1 was also shown to interfere with the regulation of expression of several genes by the growth rate. About a tenth of the genes differentially expressed in the Δlae1 mutant under either growth condition were found to be clustered in the genome, but no specific gene group was associated with this phenomenon.

conclusionsOur data show that - using T. reesei LAE1 as a model - the investigation of transcriptome in regulatory mutants at constant growth rates leads to new insights into the physiological roles of the respective regulator.

Indexed as

Culture MediaFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalGenome, FungalGlucoseMethyltransferasesMutationTrichodermaCulture MediaFungal ProteinsGlucoseMethyltransferases

Identifiers

PMID24909838
PMCPMC4061448

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.