Evidence map›Paper›PMID 24907552›Full record

ArticleJournal of molecular biology2014

Crystal structures of ricin toxin's enzymatic subunit (RTA) in complex with neutralizing and non-neutralizing single-chain antibodies.

Michael J Rudolph, David J Vance, Jonah Cheung, Matthew C Franklin, Fiana Burshteyn, Michael S Cassidy, Ebony N Gary, Cristina Herrera, Charles B Shoemaker, Nicholas J Mantis

Abstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Michael J RudolphNew York Structural Biology Center, New York, NY 10027, USA. Electronic address: mrudolph@nysbc.org.
David J VanceDivision of Infectious Diseases, Wadsworth Center, New York State Department of Health, Albany, NY 12208, USA.
Jonah CheungNew York Structural Biology Center, New York, NY 10027, USA.
Matthew C FranklinNew York Structural Biology Center, New York, NY 10027, USA.
Fiana BurshteynNew York Structural Biology Center, New York, NY 10027, USA.
Michael S CassidyNew York Structural Biology Center, New York, NY 10027, USA.
Ebony N GaryNew York Structural Biology Center, New York, NY 10027, USA.
Cristina HerreraDivision of Infectious Diseases, Wadsworth Center, New York State Department of Health, Albany, NY 12208, USA; Department of Biomedical Sciences, University at Albany, Albany, NY 12201, USA.
Charles B ShoemakerTufts Cummings School of Veterinary Medicine, North Grafton, MA 01536, USA.
Nicholas J MantisDivision of Infectious Diseases, Wadsworth Center, New York State Department of Health, Albany, NY 12208, USA; Department of Biomedical Sciences, University at Albany, Albany, NY 12201, USA. Electronic address: nicholas.mantis@health.ny.gov.
New York Structural Biology Center · USWadsworth Center · USNew England Disabled Sports · USNew York State Department of Health · US

Funding

Treatments for Nipah Virus InfectionU54AI057159 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ONDERDONK, ANDREW B. · 2003 to 2013
$113.7M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Ricin toxin: Neutralizing antibodies and vaccine designR03AI097688 · NIAID · WADSWORTH CENTER · PI MANTIS, NICHOLAS J. · 2012 to 2013
$136k
NIAID NIH HHS AI097688NIAID NIH HHS R03 AI097688NIAID NIH HHS U54 AI057159NIGMS NIH HHS P41 GM111244
6 · The paper itself

Abstract

Ricin is a select agent toxin and a member of the RNA N-glycosidase family of medically important plant and bacterial ribosome-inactivating proteins. In this study, we determined X-ray crystal structures of the enzymatic subunit of ricin (RTA) in complex with the antigen binding domains (VHH) of five unique single-chain monoclonal antibodies that differ in their respective toxin-neutralizing activities. None of the VHHs made direct contact with residues involved in RTA's RNA N-glycosidase activity or induced notable allosteric changes in the toxin's subunit. Rather, the five VHHs had overlapping structural epitopes on the surface of the toxin and differed in the degree to which they made contact with prominent structural elements in two folding domains of the RTA. In general, RTA interactions were influenced most by the VHH CDR3 (CDR, complementarity-determining region) elements, with the most potent neutralizing antibody having the shortest and most conformationally constrained CDR3. These structures provide unique insights into the mechanisms underlying toxin neutralization and provide critically important information required for the rational design of ricin toxin subunit vaccines.

Indexed as

Amino Acid SequenceAnimalsAntibodies, NeutralizingCamelusCrystallography, X-RayHydrogen BondingModels, MolecularMolecular Sequence DataProtein BindingProtein Interaction Domains and MotifsProtein Structure, QuaternaryProtein Structure, SecondaryRicinRicinus communisSingle-Chain AntibodiesAntibodies, NeutralizingRicinSingle-Chain Antibodiesantibodynanobodyneutralizingtoxin

Identifiers

PMID24907552
PMCPMC4128236
OpenAlexW1985154010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.