Evidence map›Paper›PMID 24907331›Full record

ArticleApplied and environmental microbiology2014

ε-Poly-L-lysine peptide chain length regulated by the linkers connecting the transmembrane domains of ε-Poly-L-lysine synthetase.

Yoshimitsu Hamano, Naoko Kito, Akihiro Kita, Yuuki Imokawa, Kazuya Yamanaka, Chitose Maruyama, Hajime Katano

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. A Study of Type II ɛ-PL Degrading Enzyme (pldII) inInternational journal of molecular sciences · 2022
    Article
  5. Article
  6. Article
  7. Epsilon-poly-L-lysine: Recent Advances in Biomanufacturing and Applications.Frontiers in bioengineering and biotechnology · 2021
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yoshimitsu HamanoDepartment of Bioscience, Fukui Prefectural University, Fukui, Japan hamano@fpu.ac.jp.
Naoko KitoDepartment of Bioscience, Fukui Prefectural University, Fukui, Japan.
Akihiro KitaDepartment of Bioscience, Fukui Prefectural University, Fukui, Japan.
Yuuki ImokawaDepartment of Bioscience, Fukui Prefectural University, Fukui, Japan.
Kazuya YamanakaYokohama Research Center, JNC Corporation, Yokohama, Japan.
Chitose MaruyamaDepartment of Bioscience, Fukui Prefectural University, Fukui, Japan.
Hajime KatanoDepartment of Bioscience, Fukui Prefectural University, Fukui, Japan.
Fukui Prefectural University · JPJGC (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ε-Poly-l-lysine (ε-PL), consisting of 25 to 35 l-lysine residues with linkages between the α-carboxyl groups and ε-amino groups, is produced by Streptomyces albulus NBRC14147. ε-PL synthetase (Pls) is a membrane protein with six transmembrane domains (TM1 to TM6) as well as both an adenylation domain and a thiolation domain, characteristic of the nonribosomal peptide synthetases. Pls directly generates ε-PL chain length diversity (25- to 35-mer), but the processes that control the chain length of ε-PL during the polymerization reaction are still not fully understood. Here, we report on the identification of Pls amino acid residues involved in the regulation of the ε-PL chain length. From approximately 12,000 variants generated by random mutagenesis, we found 8 Pls variants that produced shorter chains of ε-PL. These variants have one or more mutations in two linker regions connecting the TM1 and TM2 domains and the TM3 and TM4 domains. In the Pls catalytic mechanism, the growing chain of ε-PL is not tethered to the enzyme, implying that the enzyme must hold the growing chain until the polymerization reaction is complete. Our findings reveal that the linker regions are important contributors to grasp the growing chain of ε-PL.

Indexed as

Amino Acid SequenceBacterial ProteinsCell MembraneMolecular Sequence DataPeptide SynthasesPolylysineProtein Structure, TertiarySequence AlignmentStreptomycesBacterial Proteinsnon-ribosomal peptide synthasePeptide SynthasesPolylysine

Identifiers

PMID24907331
PMCPMC4135771
OpenAlexW2133882652

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.