Evidence map›Paper›PMID 24906858›Full record

ArticleInvestigative ophthalmology & visual science2014

Rare complement factor H variant associated with age-related macular degeneration in the Amish.

Joshua D Hoffman, Jessica N Cooke Bailey, Laura D'Aoust, William Cade, Juan Ayala-Haedo, Denise Fuzzell, Renee Laux, Larry D Adams, Lori Reinhart-Mercer, Laura Caywood and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The GGLEAM Study: Understanding Glaucoma in the Ohio Amish.International journal of environmental research and public health · 2021
    Article
  12. Article
  13. Article
  14. Genetic Risk Scores.Current protocols in human genetics · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Panel sequencing distinguishes monogenic forms of nephritis from nephrosis in children.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2019
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Joshua D HoffmanCenter for Human Genetics Research, Vanderbilt University Medical Center, Nashville, Tennessee, United States.
Jessica N Cooke BaileyDepartment of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio, United States.
Laura D'AoustCenter for Human Genetics Research, Vanderbilt University Medical Center, Nashville, Tennessee, United States.
William CadeJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
Juan Ayala-HaedoJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
Denise FuzzellDepartment of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio, United States.
Renee LauxDepartment of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio, United States.
Larry D AdamsJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
Lori Reinhart-MercerJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
Laura CaywoodJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
Patrice Whitehead-GayJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
Anita AgarwalDepartment of Ophthalmology and Visual Sciences, Vanderbilt University, Nashville, Tennessee, United States.
Gaofeng WangJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
William K ScottJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
Margaret A Pericak-VanceJohn P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, United States.
Jonathan L HainesCenter for Human Genetics Research, Vanderbilt University Medical Center, Nashville, Tennessee, United States Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio, United States.
University of Miami · USCase Western Reserve University · USCenter for Human Genetics · USVanderbilt University · USVanderbilt University Medical Center · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
Unifying Genetics Epidemiology of Macular DegenerationR01EY012118 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI AGARWAL, ANITA, HAINES, JONATHAN L · 2006 to 2015
$12.2M
Genetic Studies of Dementia in the AmishR01AG019085 · NIA · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 2001 to 2011
$11.0M
Training Program on Genetic Variation and Human PhenotypesT32GM080178 · NIGMS · VANDERBILT UNIVERSITY · PI COX, NANCY J, SAMUELS, DAVID C · 2007 to 2021
$3.1M
Genetic Studies of Successful Aging in the AmishR01AG019726 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SCOTT, WILLIAM K. · 2003 to 2007
$2.9M
Training Program in Quantitative Ocular GenomicsT32EY021453 · NEI · VANDERBILT UNIVERSITY · PI BRANTLEY, MILAM A, COX, NANCY J · 2011 to 2020
$1.4M
Modeling Macular Degeneration Progression Using Quantitative PhenotypesF31AG044089 · NIA · VANDERBILT UNIVERSITY · PI HOFFMAN, JOSHUA D. · 2013 to 2014
$75k
NEI NIH HHS EY21453-2NEI NIH HHS R01 EY012118NEI NIH HHS T32 EY021453NIA NIH HHS AG019085NIA NIH HHS AG019726NIA NIH HHS AG044089NIA NIH HHS F31 AG044089NIA NIH HHS R01 AG019085NIA NIH HHS R01 AG019726NIGMS NIH HHS T32 GM007347NIGMS NIH HHS T32 GM080178
6 · The paper itself

Abstract

purposeAge-related macular degeneration is the leading cause of blindness among the adult population in the developed world. To further the understanding of this disease, we have studied the genetically isolated Amish population of Ohio and Indiana.

methodsCumulative genetic risk scores were calculated using the 19 known allelic associations. Exome sequencing was performed in three members of a small Amish family with AMD who lacked the common risk alleles in complement factor H (CFH) and ARMS2/HTRA1. Follow-up genotyping and association analysis was performed in a cohort of 973 Amish individuals, including 95 with self-reported AMD.

resultsThe cumulative genetic risk score analysis generated a mean genetic risk score of 1.12 (95% confidence interval [CI]: 1.10, 1.13) in the Amish controls and 1.18 (95% CI: 1.13, 1.22) in the Amish cases. This mean difference in genetic risk scores is statistically significant (P = 0.0042). Exome sequencing identified a rare variant (P503A) in CFH. Association analysis in the remainder of the Amish sample revealed that the P503A variant is significantly associated with AMD (P = 9.27 × 10(-13)). Variant P503A was absent when evaluated in a cohort of 791 elderly non-Amish controls, and 1456 non-Amish cases.

conclusionsData from the cumulative genetic risk score analysis suggests that the variants reported by the AMDGene consortium account for a smaller genetic burden of disease in the Amish compared with the non-Amish Caucasian population. Using exome sequencing data, we identified a novel missense mutation that is shared among a densely affected nuclear Amish family and located in a gene that has been previously implicated in AMD risk.

Indexed as

Polymorphism, Single NucleotideAgedAged, 80 and overAmishComplement Factor HExomeFemaleGene FrequencyGenetic LinkageGenotypeHumansIndianaMacular DegenerationMaleMiddle AgedMutation, MissenseCFH protein, humanComplement Factor Hage-related macular degenerationexome sequencinglinkage analysisrare variantrisk score analysis

Identifiers

PMID24906858
PMCPMC4107619
OpenAlexW2051467750

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.