Evidence map›Paper›PMID 24906815›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2014

Comparative genetic mapping and genomic region collinearity analysis of the powdery mildew resistance gene Pm41.

Zhenzhong Wang, Yu Cui, Yongxing Chen, Deyun Zhang, Yong Liang, Dong Zhang, Qiuhong Wu, Jingzhong Xie, Shuhong Ouyang, Delin Li and 7 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Comparative Genomics Identifies the Evolutionarily Conserved GeneInternational journal of molecular sciences · 2023
    Article
  3. Fighting wheat powdery mildew: from genes to fields.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Review
  4. Article
  5. Genetic mapping of a novel powdery mildew resistance gene in wild emmer wheat from "Evolution Canyon" in Mt. Carmel Israel.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
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  7. A durum wheat adult plant stripe rust resistance QTL and its relationship with the bread wheat Yr80 locus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
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  11. Article
  12. Article
  13. A saturated SNP linkage map for the orange wheat blossom midge resistance gene Sm1.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  14. Fine genetic mapping of spot blotch resistance gene Sb3 in wheat (Triticum aestivum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  15. Article
  16. Article
  17. Molecular tagging of a new broad-spectrum powdery mildew resistance allele Pm2c in Chinese wheat landrace Niaomai.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
  18. Comparative fine mapping of the Wax 1 (W1) locus in hexaploid wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
  19. Article
  20. Genetic and physical mapping of powdery mildew resistance gene MlHLT in Chinese wheat landrace Hulutou.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Zhenzhong WangState Key Laboratory for Agrobiotechnology, Department of Plant Genetics and Breeding, China Agricultural University, Beijing, 100193, China.
Yu Cui
Yongxing Chen
Deyun Zhang
Yong Liang
Dong Zhang
Qiuhong Wu
Jingzhong Xie
Shuhong Ouyang
Delin Li
Yinlian Huang
Ping Lu
Guoxin Wang
Meihua Yu
Shenghui Zhou
Qixin Sun
Zhiyong Liu
China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageBy applying comparative genomics analyses, a high-density genetic linkage map narrowed the powdery mildew resistance gene Pm41 originating from wild emmer in a sub-centimorgan genetic interval. Wheat powdery mildew, caused by Blumeria graminis f. sp. tritici, results in large yield losses worldwide. A high-density genetic linkage map of the powdery mildew resistance gene Pm41, originating from wild emmer (Triticum turgidum var. dicoccoides) and previously mapped to the distal region of chromosome 3BL bin 0.63-1.00, was constructed using an F5:6 recombinant inbred line population derived from a cross of durum wheat cultivar Langdon and wild emmer accession IW2. By applying comparative genomics analyses, 19 polymorphic sequence-tagged site markers were developed and integrated into the Pm41 genetic linkage map. Ultimately, Pm41 was mapped in a 0.6 cM genetic interval flanked by markers XWGGC1505 and XWGGC1507, which correspond to 11.7, 19.2, and 24.9 kb orthologous genomic regions in Brachypodium, rice, and sorghum, respectively. The XWGGC1506 marker co-segregated with Pm41 and could be served as a starting point for chromosome landing and map-based cloning as well as marker-assisted selection of Pm41. Detailed comparative genomics analysis of the markers flanking the Pm41 locus in wheat and the putative orthologous genes in Brachypodium, rice, and sorghum suggests that the gene order is highly conserved between rice and sorghum. However, intra-chromosome inversions and re-arrangements are evident in the wheat and Brachypodium genomic regions, and gene duplications are also present in the orthologous genomic regions of Pm41 in wheat, indicating that the Brachypodium gene model can provide more useful information for wheat marker development.

Indexed as

Chromosome MappingAscomycotaBrachypodiumDisease ResistanceExpressed Sequence TagsGene DuplicationGenes, DuplicateGenes, PlantGenetic LinkageGenetic MarkersGenome, PlantGenomicsInbreedingOryzaPhenotypePlant DiseasesGenetic Markers

Identifiers

PMID24906815
OpenAlexW1977557344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.