Evidence map›Paper›PMID 24906018›Full record

ArticleAmerican journal of human genetics2014

FORGE Canada Consortium: outcomes of a 2-year national rare-disease gene-discovery project.

Chandree L Beaulieu, Jacek Majewski, Jeremy Schwartzentruber, Mark E Samuels, Bridget A Fernandez, Francois P Bernier, Michael Brudno, Bartha Knoppers, Janet Marcadier, David Dyment and 14 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of human genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 137 papers.

0numbers the graph read from it
0cells of the map it votes in
137citing papers in PubMed
24.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

137 citing papers in PubMed, 249 citations in OpenAlex.

  1. Trial
  2. Article
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  4. Article
  5. Article
  6. Leveraging clinical intuition to improve accuracy of phenotype-driven prioritization.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  7. Article
  8. Considerations for reporting variants in novel candidate genes identified during clinical genomic testing.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. BiallelicNeurology. Genetics · 2023
    Article
  15. Article
  16. Article
  17. Novel Homozygous Variant inNeurology. Genetics · 2023
    Article
  18. Review
  19. Review
  20. Article

77 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 13 institutions in 1 country.

Chandree L BeaulieuChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.
Jacek MajewskiDepartment of Human Genetics, McGill University, Montreal, QC H3A 1B1, Canada.
Jeremy SchwartzentruberMcGill University and Genome Quebec Innovation Centre, Montreal, QC H3A 1A4, Canada.
Mark E SamuelsCentre de Recherche du Centre Hospitalier Universitaire Sainte-Justine, Department of Medicine, Université de Montréal, Montreal, QC H3T 1C5, Canada.
Bridget A FernandezDisciplines of Genetics and Medicine, Faculty of Medicine, Memorial University of Newfoundland, St. John's, NL A1B 3V6, Canada.
Francois P BernierDepartment of Medical Genetics, University of Calgary, Calgary, AB T2N 4N1, Canada.
Michael BrudnoDepartment of Computer Science, Donnelly Centre and Banting and Best Department of Medical Research, University of Toronto and Centre for Computational Medicine, Hospital for Sick Children, Toronto, ON M5S 3G4, Canada; The Centre for Applied Genomics and Genetics and Genome Biology, Hospital for Sick Children, Toronto, ON M5G 0A4, Canada.
Bartha KnoppersMcGill University and Centre of Genomics and Policy, Montreal, QC H3A 1A4, Canada.
Janet MarcadierChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.
David DymentChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.
Shelin AdamDepartment of Medical Genetics, University of British Columbia, Vancouver, BC V6H 3N1, Canada.
Dennis E BulmanChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.
Steve J M JonesCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z4S6, Canada.
Denise AvardMcGill University and Centre of Genomics and Policy, Montreal, QC H3A 1A4, Canada.
Minh Thu NguyenMcGill University and Centre of Genomics and Policy, Montreal, QC H3A 1A4, Canada.
Francois RousseauCentre de Recherche du Centre Hospitalier Universitaire de Québec, Department of Molecular Biology, Medical Biochemistry, and Pathology, Université Laval, Quebec City, QC G1L 3L5, Canada.
Christian MarshallThe Centre for Applied Genomics and Genetics and Genome Biology, Hospital for Sick Children, Toronto, ON M5G 0A4, Canada.
Richard F WintleThe Centre for Applied Genomics and Genetics and Genome Biology, Hospital for Sick Children, Toronto, ON M5G 0A4, Canada.
Yaoqing ShenCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z4S6, Canada.
Stephen W SchererThe Centre for Applied Genomics and Genetics and Genome Biology, Hospital for Sick Children, Toronto, ON M5G 0A4, Canada; McLaughlin Centre and the Department of Molecular Genetics, University of Toronto, Toronto, ON M5G 0A4, Canada.
FORGE Canada Consortium
Jan M FriedmanDepartment of Medical Genetics, University of British Columbia, Vancouver, BC V6H 3N1, Canada.
Jacques L MichaudCentre de Recherche du Centre Hospitalier Universitaire Sainte-Justine, Department of Medicine, Université de Montréal, Montreal, QC H3T 1C5, Canada.
Kym M BoycottChildren's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada. Electronic address: kboycott@cheo.on.ca.
McGill University · CAChildren's Hospital of Eastern Ontario · CACanada's Michael Smith Genome Sciences Centre · CAHospital for Sick Children · CAUniversité de Montréal · CAUniversity of British Columbia · CAUniversity of Ottawa · CACentre hospitalier universitaire de Québec · CAMcGill University and Génome Québec Innovation Centre · CAMemorial University of Newfoundland · CASickKids Foundation · CAUniversity of Calgary · CAUniversity of Toronto · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Inherited monogenic disease has an enormous impact on the well-being of children and their families. Over half of the children living with one of these conditions are without a molecular diagnosis because of the rarity of the disease, the marked clinical heterogeneity, and the reality that there are thousands of rare diseases for which causative mutations have yet to be identified. It is in this context that in 2010 a Canadian consortium was formed to rapidly identify mutations causing a wide spectrum of pediatric-onset rare diseases by using whole-exome sequencing. The FORGE (Finding of Rare Disease Genes) Canada Consortium brought together clinicians and scientists from 21 genetics centers and three science and technology innovation centers from across Canada. From nation-wide requests for proposals, 264 disorders were selected for study from the 371 submitted; disease-causing variants (including in 67 genes not previously associated with human disease; 41 of these have been genetically or functionally validated, and 26 are currently under study) were identified for 146 disorders over a 2-year period. Here, we present our experience with four strategies employed for gene discovery and discuss FORGE's impact in a number of realms, from clinical diagnostics to the broadening of the phenotypic spectrum of many diseases to the biological insight gained into both disease states and normal human development. Lastly, on the basis of this experience, we discuss the way forward for rare-disease genetic discovery both in Canada and internationally.

Indexed as

CanadaGenetic Association StudiesHumansMutationPhenotypeRare DiseasesSocieties, Scientific

Identifiers

PMID24906018
PMCPMC4121481
OpenAlexW2070809717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.