Evidence map›Paper›PMID 24906001›Full record

ArticlePloS one2014

Archaeal Tuc1/Ncs6 homolog required for wobble uridine tRNA thiolation is associated with ubiquitin-proteasome, translation, and RNA processing system homologs.

Nikita E Chavarria, Sungmin Hwang, Shiyun Cao, Xian Fu, Mary Holman, Dina Elbanna, Suzanne Rodriguez, Deanna Arrington, Markus Englert, Sivakumar Uthandi and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Insights into the Lysine Acetylome of the HaloarchaeonAntioxidants (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. The first apicoplast tRNA thiouridylase plays a vital role in the growth ofFrontiers in cellular and infection microbiology · 2022
    Article
  10. Biosynthesis and Degradation of Sulfur Modifications in tRNAs.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Nonredox thiolation in tRNA occurring via sulfur activation by a [4Fe-4S] cluster.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Review
  18. Article
  19. A [3Fe-4S] cluster is required for tRNA thiolation in archaea and eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Nikita E ChavarriaDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Sungmin HwangDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Shiyun CaoDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Xian FuDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Mary HolmanDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Dina ElbannaDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Suzanne RodriguezDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Deanna ArringtonDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Markus EnglertDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America.
Sivakumar UthandiDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America.
Dieter SöllDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America; Department of Chemistry, Yale University, New Haven, Connecticut, United States of America.
Julie A Maupin-FurlowDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America; Genetics Institute, University of Florida, Gainesville, Florida, United States of America.
University of Florida · USYale University · US

Funding

TRANSFER RNAR01GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 1985 to 2016
$21.3M
Ubiquitin-like Small Archaeal Protein Modification (SAMPylation)R01GM057498 · NIGMS · UNIVERSITY OF FLORIDA · PI MAUPIN-FURLOW, JULIE A · 2000 to 2024
$4.9M
NIGMS NIH HHS R01 GM022854NIGMS NIH HHS R01 GM057498NIGMS NIH HHS R01GM22854
6 · The paper itself

Abstract

While cytoplasmic tRNA 2-thiolation protein 1 (Tuc1/Ncs6) and ubiquitin-related modifier-1 (Urm1) are important in the 2-thiolation of 5-methoxycarbonylmethyl-2-thiouridine (mcm5s2U) at wobble uridines of tRNAs in eukaryotes, the biocatalytic roles and properties of Ncs6/Tuc1 and its homologs are poorly understood. Here we present the first report of an Ncs6 homolog of archaea (NcsA of Haloferax volcanii) that is essential for maintaining cellular pools of thiolated tRNA(Lys)UUU and for growth at high temperature. When purified from Hfx. volcanii, NcsA was found to be modified at Lys204 by isopeptide linkage to polymeric chains of the ubiquitin-fold protein SAMP2. The ubiquitin-activating E1 enzyme homolog of archaea (UbaA) was required for this covalent modification. Non-covalent protein partners that specifically associated with NcsA were also identified including UbaA, SAMP2, proteasome activating nucleotidase (PAN)-A/1, translation elongation factor aEF-1α and a β-CASP ribonuclease homolog of the archaeal cleavage and polyadenylation specificity factor 1 family (aCPSF1). Together, our study reveals that NcsA is essential for growth at high temperature, required for formation of thiolated tRNA(Lys)UUU and intimately linked to homologs of ubiquitin-proteasome, translation and RNA processing systems.

Indexed as

Archaeal ProteinsHaloferax volcaniiProteasome Endopeptidase ComplexRNA, ArchaealRNA, TransferUbiquitinsProtein BiosynthesisRNA Processing, Post-TranscriptionalUridineArchaeal ProteinsProteasome Endopeptidase ComplexRNA, ArchaealRNA, TransferUbiquitinsUridine

Identifiers

PMID24906001
PMCPMC4048286
OpenAlexW1995795068

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.