Evidence map›Paper›PMID 24905233›Full record

ArticleAnalytical chemistry2014

Global phosphoproteomics of activated B cells using complementary metal ion functionalized soluble nanopolymers.

Keerthi B Jayasundera, Anton B Iliuk, Andrew Nguyen, Renee Higgins, Robert L Geahlen, W Andy Tao

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Identification of Phosphorylated Proteins on a Global Scale.Current protocols in chemical biology · 2018
    Article
  4. Article
  5. Article
  6. Quantitative Phosphoproteomic Analysis of T-Cell Receptor Signaling.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
  7. Quantitative proteomics and terminomics to elucidate the role of ubiquitination and proteolysis in adaptive immunity.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2016
    Review
  8. Article
  9. Article
  10. Protein networks and activation of lymphocytes.Current opinion in immunology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Keerthi B JayasunderaDepartment of Chemistry, ‡Department of Biochemistry, §School of Chemical Engineering, ∥Department of Medicinal Chemistry and Molecular Pharmacology, and ⊥the Purdue Center for Cancer Research, Purdue University , West Lafayette, Indiana 47907, United States.
Anton B Iliuk
Andrew Nguyen
Renee Higgins
Robert L Geahlen
W Andy Tao
Purdue University West Lafayette · USCenter for Cancer Research · US

Funding

Tyrosine Kinases and Lymphocyte ActivationR01AI098132 · NIAID · PURDUE UNIVERSITY · PI GEAHLEN, ROBERT L · 2012 to 2016
$1.6M
New Proteomic Technologies for the Analysis of Tyrosine Kinase Signaling PathwaysR01GM088317 · NIGMS · PURDUE UNIVERSITY · PI TAO, W. ANDY · 2010 to 2014
$1.6M
Interdisciplinary Cancer Prevention Research Internship ProgramR25CA128770 · NCI · PURDUE UNIVERSITY · PI TEEGARDEN, DOROTHY · 2008 to 2012
$1.5M
Novel soluble nanopolymers for enrichment of low abundant phosphoproteinsR43CA162767 · NCI · TYMORA ANALYTICAL OPERATIONS, LLC · PI ILIUK, ANTON · 2012 to 2013
$294k
NCI NIH HHS CA128770NCI NIH HHS R25 CA128770NCI NIH HHS R43 CA162767NIAID NIH HHS AI098132NIAID NIH HHS R01 AI098132NIGMS NIH HHS GM088317NIGMS NIH HHS R01 GM088317
6 · The paper itself

Abstract

Engagement of the B cell receptor for antigen (BCR) leads to immune responses through a cascade of intracellular signaling events. Most studies to date have focused on the BCR and protein tyrosine phosphorylation. Because spleen tyrosine kinase, Syk, is an upstream kinase in multiple BCR-regulated signaling pathways, it also affects many downstream events that are modulated through the phosphorylation of proteins on serine and threonine residues. Here, we report a novel phosphopeptide enrichment strategy and its application to a comprehensive quantitative phosphoproteomics analysis of Syk-dependent downstream signaling events in B cells, focusing on serine and threonine phosphorylation. Using a combination of the Syk inhibitor piceatannol, SILAC quantification, peptide fractionation, and complementary PolyMAC-Ti and PolyMAC-Zr enrichment techniques, we analyzed changes in BCR-stimulated protein phosphorylation that were dependent on the activity of Syk. We identified and quantified over 13,000 unique phosphopeptides, with a large percentage dependent on Syk activity in BCR-stimulated B cells. Our results not only confirmed many known functions of Syk, but more importantly, suggested many novel roles, including in the ubiquitin proteasome pathway, that warrant further exploration.

Indexed as

B-LymphocytesCell LineChemical FractionationDendrimersHumansImmunoglobulin MIntracellular Signaling Peptides and ProteinsIonsMetalsPhosphopeptidesPhosphorylationProtein-Tyrosine KinasesProteomicsSignal TransductionSyk KinaseTitaniumDendrimersImmunoglobulin MIntracellular Signaling Peptides and ProteinsIonsMetalsPAMAM StarburstPhosphopeptidesProtein-Tyrosine KinasesSyk KinaseSYK protein, humanTitaniumZirconium

Identifiers

PMID24905233
PMCPMC4079319
OpenAlexW2332201846

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.