Evidence map›Paper›PMID 24904249›Full record

ArticleJournal of applied crystallography2014

Using a commodity high-definition television for collaborative structural biology.

Ragothaman Yennamalli, Raj Arangarasan, Aaron Bryden, Michael Gleicher, George N Phillips

Abstract read
In one paragraph

Article in Journal of applied crystallography, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
  5. The Structure of theFrontiers in cell and developmental biology · 2022
    Article
  6. Structural characterization of DynU16, a START/Bet v1-like protein involved in dynemicin biosynthesis.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  7. Article
  8. The Journal of biological chemistry · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ragothaman YennamalliDepartment of Biochemistry and Cell Biology, Rice University, 6100 Main Street, Houston, Texas 77005, USA.
Raj ArangarasanThe Raj Organization, Henderson, Nevada 89074, USA.
Aaron BrydenDepartment of Computer Sciences, University of Wisconsin-Madison, Wisconsin 53706, USA ; Praxik LLC, 2701 Kent Avenue, Suite 130, Ames, Iowa 50014, USA.
Michael GleicherDepartment of Computer Sciences, University of Wisconsin-Madison, Wisconsin 53706, USA.
George N PhillipsDepartment of Biochemistry and Cell Biology, Rice University, 6100 Main Street, Houston, Texas 77005, USA.

Funding

Enzyme Discovery for Natural Product BiosynthesisU01GM098248 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PHILLIPS, GEORGE NEAL · 2011 to 2015
$2.8M
Machine Learning and Visualization in Structural BiologyR01LM008796 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI SHAVLIK, JUDE W · 2006 to 2009
$1.2M
NIGMS NIH HHS U01 GM098248NLM NIH HHS R01 LM008796
6 · The paper itself

Abstract

Visualization of protein structures using stereoscopic systems is frequently needed by structural biologists working to understand a protein's structure-function relationships. Often several scientists are working as a team and need simultaneous interaction with each other and the graphics representations. Most existing molecular visualization tools support single-user tasks, which are not suitable for a collaborative group. Expensive caves, domes or geowalls have been developed, but the availability and low cost of high-definition televisions (HDTVs) and game controllers in the commodity entertainment market provide an economically attractive option to achieve a collaborative environment. This paper describes a low-cost environment, using standard consumer game controllers and commercially available stereoscopic HDTV monitors with appropriate signal converters for structural biology collaborations employing existing binary distributions of commonly used software packages like

Indexed as

collaborative structural biologyprotein structure visualization

Identifiers

PMID24904249
PMCPMC4038803

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.